BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4511.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimon...    65   5e-12
gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas a...    63   2e-11

>gi|134094100|ref|YP_001099175.1| putative Nitrilase [Herminiimonas
           arsenicoxydans]
          Length = 269

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 23/219 (10%)

Query: 9   EDNVARSIAFIDRAAAEGAALVVLPELVNTGYVFASRAEAFALAETSPDGPTTLAWIEAA 68
           E+N+  +   I  AA++GA+L++LPE      +     +   LAE    GP       AA
Sbjct: 20  EENIVTARRLIADAASQGASLILLPEY--WAAMGMHENDKLGLAEQIDAGPIQSFMAAAA 77

Query: 69  RRNQIYIVAG---IAEREGERLYNSAVVIGPDG-WLGVYRKLHLWG--------DEHLFF 116
           R + ++++ G   +A    +++ N+ +V  P G  +  Y K+HL+         DE    
Sbjct: 78  REHSVWLIGGTLPMAASAADKVLNTTMVYNPAGERVKRYDKIHLFSFTRGTESYDEARTI 137

Query: 117 EAGDKGLPLFHTQWGRLGVAICYDGWFPEVYRLLAMQGADVVAIPTNWVPMPGQPANREA 176
             G + +  F   +G++G+++CYD  FPE+YR  AM    ++ +P  +    G+     A
Sbjct: 138 AHGTE-VTTFDAPFGKVGLSVCYDLRFPELYR--AMGDCMLIVVPAAFTYTTGK-----A 189

Query: 177 MATSLAMANAHSNALNIVCANRIGTER-GQPFIGQSLII 214
               L  A A  N   ++ A + G  R G+   G S++I
Sbjct: 190 HWEILLRARAIENQCYVLAAAQGGRHRNGRTTWGHSMLI 228


>gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas
           arsenicoxydans]
          Length = 537

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 14/220 (6%)

Query: 5   IGHKEDNVARSIAFIDRAAAEGAALVVLPELVNTGYVFASRAEAFALAETSPDGPTTLAW 64
           +G    N A+   F  RAA +GA +V+ PEL   GY         +    S      LA 
Sbjct: 14  VGDLAGNRAKIAEFSRRAAEQGADIVLTPELSLVGYPPEDLLLRQSFYAKSAQALDALAA 73

Query: 65  IEAARRNQIYIVAGIAEREGERLYNSAVVIGPDGWLGVYRKLHLWG----DEHLFFEAGD 120
             A  +N   +V    E++G+R +N+A V+        Y K  L      DE  +F + D
Sbjct: 74  DLAELKNLHVVVGHPFEKDGQR-FNAASVLLNGKISATYCKHDLPNATVFDEKRYFSSCD 132

Query: 121 KGLPLFHTQWGRLGVAICYDGWFPEVYRLLAMQGADVVAIPTNWVPMPGQP--ANREAMA 178
           + + +F  +  R G+ IC D WFP+     A  GA V+ +P       G P   N++ + 
Sbjct: 133 QAV-VFDVKGVRFGINICEDTWFPQAPARAAAAGAQVLLVPN------GSPYHMNKQHVR 185

Query: 179 TSLAMANAHSNALNIVCANRIGTERGQPFIGQSLIIGAQG 218
             +  AN  ++ +++V AN +G +    F G S ++   G
Sbjct: 186 IDVMHANVTTHGMSLVYANLVGAQDELIFDGNSFVLDQAG 225


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 564,099
Number of extensions: 23367
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)