BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4508.p
         (241 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093832|ref|YP_001098907.1| thioredoxin-like fold [Herminii...    65   4e-12

>gi|134093832|ref|YP_001098907.1| thioredoxin-like fold
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 14/199 (7%)

Query: 10  TVLHYIHDPLCGWCYGAAP-LVAAARAI--LPVQAHGGGMMAGRNRRRVDAQLRDYVMPH 66
           T L YI DP+C WCYG  P L      I   P++   GG+ A  N   +D +L+  ++ H
Sbjct: 2   TKLIYIADPMCSWCYGFGPELTTLLNGIPDTPLEIVLGGLRA-YNPDLMDEKLKASLLAH 60

Query: 67  DHRIAQMTGQTFGENYFNGLLKDTNAVFDSAPPIAAVLAVTALKGEAAGLDMLAAIQRAH 126
             ++ + +G  F E+     L   N ++D+ P   AV+A   L    A LD+  AIQ   
Sbjct: 61  WEKVEEASGLPFSEDA----LSHPNFIYDTEPACRAVVAARLLAPHKA-LDVFHAIQHGF 115

Query: 127 YQQGRRISEPATLTELAQALEIDAATFAAELQRV----EQEELAQHIEASRELLNYVGGR 182
           Y +G   ++   L +++  + ++ A    EL+        E+               G  
Sbjct: 116 YAEGLDTTKGDVLAKISVDV-LNKAGIDIELKDFLAAWSSEDTITATNNDFLQTQRWGVT 174

Query: 183 GFPTFVLQRGDTLEVIDTG 201
           GFPT V +    L ++ +G
Sbjct: 175 GFPTLVFENAGELHLVTSG 193


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 421,886
Number of extensions: 15586
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 162
Effective length of database: 740,042
Effective search space: 119886804
Effective search space used: 119886804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)