BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4506.p (305 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 212 2e-56 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 166 1e-42 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 162 3e-41 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 137 6e-34 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 122 2e-29 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 212 bits (540), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/291 (42%), Positives = 170/291 (58%), Gaps = 10/291 (3%) Query: 7 MQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66 M+ FVAVV+ S +AA +LD+S+ +VS+YV LED +G RLL+RTTRRLSLT +G Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 PRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPGVAVDLL 126 RC Q+L D+ PRG L++ SF ++ + +Y +RYP V +D+ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 ALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRKVEDLAL 186 DR V+L+E+ DLAIR+ N E LIAR+L R V+CA+PAYL HG P+ EDL Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 187 HNCLTHSYVGR-SLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAVLAGVGIG 245 H CL +SY W F K KT A V V G + AN +L A L G G+ Sbjct: 181 HACLNYSYSSSGDEWVFG-KGKTRAA--------VRVDGPMRANNGDMLRLAALDGAGLI 231 Query: 246 HMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFL 296 P ++VA V +G+LV L+ + +LG+Y +Y SRKH+ A +RT +D+L Sbjct: 232 WQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 MD + + F +V GSL+AAA++L ++ P VS+ +A +E + RLL+RTTRR+SLTP Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 AGNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPG 120 G L +++ + + + + T +GLL+I+ + F + + + + + YP Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRK 180 V V L DR VNLVE+ D IR + L AR++ R ++CA+PAYL HG+P Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 181 VEDLALHNC--LTHSYVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAV 238 DL HNC L S W F S K +TV V GS+SAN+ Sbjct: 181 PRDLQKHNCILLRESDEIYGSWHF---------SSGTKQETVKVRGSLSANDGECATAWA 231 Query: 239 LAGVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQ 298 L G GI + VAP + SG+L +L +++ Q +Y V+ ++ H+ A R ++DF+ Q Sbjct: 232 LDGQGIVVRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQ 291 Query: 299 RF 300 F Sbjct: 292 AF 293 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 12/306 (3%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 MD+L ++ FV V+ S +AAA L ++ +V R + LE +G RLLHR+TRRL+LT Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 AGNELLPRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPG 120 G+ L CR+ML D L A G L I+ SF + + ++ +++PG Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 VAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRK 180 + + DR V+LV+E D+ IR+ ++PN +A +L + V+C TP Y +HG P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 181 VEDLALHNCLTHSYVG--RSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAV 238 ++DLA HNCL + G + W F+ + KT +V GS+ N+ +L + + Sbjct: 181 LDDLAKHNCLAFNLQGGQQRGWYFN---------HRGKTVSVRAQGSLDCNDGELLHRWM 231 Query: 239 LAGVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFLAQ 298 G+GI + + + SG L +L ++ + + VY ++++PA +R + L Sbjct: 232 SEGLGIAWRSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISHLKT 291 Query: 299 RFAGQP 304 ++ QP Sbjct: 292 MYS-QP 296 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 137 bits (345), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 146/295 (49%), Gaps = 10/295 (3%) Query: 7 MQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTPAGNELL 66 ++ FVAV+D G+L AAA+ L + VSR ++ LE+ + LL RTTRR+ LT G L Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 67 PRCRQMLEYSDDMRHALEAPDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYPGVAVDLL 126 + R +L D+ A+ + P G LRI + F ++ V ++ YP + ++L Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 127 ALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPRKVEDLAL 186 + D+ +L+E R D+AIR+ N + L AR L + A+P YL RHG+P E LA Sbjct: 128 SNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLAG 187 Query: 187 HNCLTHSYVGRSLWQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQAVLAGVGIGH 246 H L QF+ T + A + + V ++ A+ L L G GI Sbjct: 188 HQLL-------GFLQFES--GNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIAS 238 Query: 247 MPAYMVAPLVASGQLVRLLPE-YEPLQLGMYGVYASRKHMPATLRTMLDFLAQRF 300 + YM +A+G+LVR+L Y + ++ VY + + L+FL Q+ Sbjct: 239 LADYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 15/302 (4%) Query: 1 MDRLMAMQVFVAVVDGGSLSAAAEQLDLSRPVVSRYVAELEDWVGARLLHRTTRRLSLTP 60 ++RL +++F A D S AA +L S ++R V ELE+ VG L HR TR + +T Sbjct: 2 LNRLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITE 61 Query: 61 AGNELLPRCRQMLEYSDDMRHALEA-PDETPRGLLRITTSTSFAQTQLIQAVVDYGQRYP 119 G +L R+M+ D + H D GL+RIT + + L++ ++ ++YP Sbjct: 62 FGTQLAEHAREMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQYP 121 Query: 120 GVAVDLLALDRTVNLVEERIDLAIRMTNRLEPNLIARQLGVCRSVICATPAYLARHGLPR 179 G+ ++L + ++V+++ID+ +R+ + L+AR +G + ATP +A G P Sbjct: 122 GIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVVATPELVATRGKPI 181 Query: 180 KVEDL--ALHNCLTHSYVGRSL-WQFDPKRKTTKASQKAKTQTVAVGGSISANEVTVLLQ 236 +DL L GR W F + T S ++ +++ V Sbjct: 182 TPQDLLGLPTTALMDGNTGRIWPWYFADSQPLTLTSP-----------TLVSDDPEVECD 230 Query: 237 AVLAGVGIGHMPAYMVAPLVASGQLVRLLPEYEPLQLGMYGVYASRKHMPATLRTMLDFL 296 AVLAG+G G + + P + SG+LV +L +Y+P+ +Y R +PA +R + D + Sbjct: 231 AVLAGIGYGQLSNHQAEPHIRSGRLVTVLDDYQPVPWDLYVYRPQRGPVPARIRLVFDRI 290 Query: 297 AQ 298 + Sbjct: 291 VE 292 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 528,823 Number of extensions: 19756 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 11 Length of query: 305 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 224 Effective length of database: 733,452 Effective search space: 164293248 Effective search space used: 164293248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)