BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4502.p (510 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 211 8e-56 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 129 4e-31 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 120 1e-28 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 120 1e-28 gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 120 2e-28 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 211 bits (537), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 158/527 (29%), Positives = 267/527 (50%), Gaps = 47/527 (8%) Query: 10 GIPGGKKIKQLKKYLVVVLGIAILMVMAICASTLY------QSYRQTRLSAVDNASNVTL 63 +P +K K+L + + I + V+ +C L + R+T + + A + Sbjct: 4 ALPFIRKSKRLSLQATLTVFIVFVTVLLVCILALNAWHARAEKIRETETATSNMAKALAQ 63 Query: 64 IAQRAISRNMEVLSLSLDTLAYR-YQHPLSSRRLDEAQRYAYLFGGAASVSHITVMAVIG 122 A+ + ++ L +S++ + R +PL R+++ +L + + + V Sbjct: 64 HAEDTVG-GIDNLLVSMEEMLERDSWNPLQLERMNQ-----FLRQRVTDLPLLHGLFVYD 117 Query: 123 ADGEVLASSRRRPGESAPNYSNRAYFTAHRDADNIGLYVSKPIHANLGNDMQVVVLSKRL 182 G+ +A+S+ + N ++R YF HR + G ++ PI + D ++ +S+RL Sbjct: 118 EHGQWVANSQETL-RTDLNNADREYFIFHRTHTDSGPHLGPPIRSRSTGDW-IITVSRRL 175 Query: 183 FNDDGSFAGIVVMALDLSYFRELFEGLSLGANGVISLYSDDGVVYMRVPYKEHVMGRDIN 242 + DG+FAG+V+ +++ YF ++ +G G I L +D G + +R P+ E V+G DI+ Sbjct: 176 EHADGNFAGVVLATINMQYFSAYYKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDIS 235 Query: 243 ASANFQRIQSALQHEEGSFFARANSDGVERLYTFRRIPNSPLIVFVGYAEEAIFKSWYKT 302 +Q + Q G+ AN D ER+Y++R + PL++ V + + + +SW Sbjct: 236 NGPVYQFYKR--QGSSGTAILTANIDRTERIYSYRHLDRYPLLIAVAQSTDEVLESWRN- 292 Query: 303 LYAVIVSLLIFGLLSAYL----------LLH---VRE----ELRR-RVTIEKRLEELALT 344 S + F SA + L+H VRE ELR R +E+ ELA Sbjct: 293 ------STMRFAFFSAMVLLLLWLLGARLVHQITVRERAQSELRTARDDLERSNGELAAL 346 Query: 345 ---DGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDTYGHKLGDAVL 401 D LTGL NRR D AL + R RN ++ +++ +DVD FK YND YGH GD L Sbjct: 347 ALLDSLTGLANRRRFDAALDDEFARAMRN-QTSLALIMLDVDHFKKYNDRYGHPQGDECL 405 Query: 402 QEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVYSRLIVHATSP 461 +E+++ + R D RYGGEEFV+LL TD GA +A+R+ A+ + + HA +P Sbjct: 406 KEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETP 465 Query: 462 LRVVTISVGVATL-EREHHRRVEDVLNAADAALYRAKREGRNAVRVS 507 +VT S+G+A L + + +++AAD ALY+AK +GRN +S Sbjct: 466 DGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDGRNQSCIS 512 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 1/181 (0%) Query: 324 VREELRRRVTIEKRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVD 383 +R+E R ++ LE+L + D LTG+ +R+ ++ L+ W++ + + ++FIDVD Sbjct: 129 LRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLI-DTQESLVMMFIDVD 187 Query: 384 FFKSYNDTYGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMA 443 +FK +NDTYGH GD L++VA + ++L R+++ R+GGEEF+VL + A + A Sbjct: 188 YFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAIMHA 247 Query: 444 QRLCDAVYSRLIVHATSPLRVVTISVGVATLEREHHRRVEDVLNAADAALYRAKREGRNA 503 + LC +V I HA SP + +TIS GV ++ + E +L AD+ALY+AK GRN Sbjct: 248 ENLCRSVRDLDIPHAASPHQFLTISCGVVRMKPSSMAQPEVLLEQADSALYQAKARGRNQ 307 Query: 504 V 504 V Sbjct: 308 V 308 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 108/174 (62%), Gaps = 7/174 (4%) Query: 336 KRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDTYGHK 395 +RL+ + LTD LTG+ NRR ++ L R +R+ H T S ++ID+DFFK ND YGH+ Sbjct: 139 ERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGH-TLSAMYIDLDFFKKVNDNYGHQ 197 Query: 396 LGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVYSRLI 455 GD VL+EVA I L R +D GR+GGEEFVVLL ++ A +A+R+ ++ +R + Sbjct: 198 GGDEVLREVAARIKAEL-RLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRPL 256 Query: 456 VHATSPLRVVTISVGVATLEREHHRR-----VEDVLNAADAALYRAKREGRNAV 504 V ++ +++S+GV+TL+ + + +L AD ALY AK+ GRN V Sbjct: 257 VLSSGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKV 310 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 5/179 (2%) Query: 327 ELRRRVTIEKRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFK 386 +LRRR + + +L++ DGLTGL NR L++ L E + S++ ID+D+FK Sbjct: 146 QLRRREKVGEFYRQLSMLDGLTGLYNRAWLNDKLAELVEEAH-HAGRPLSLIMIDLDYFK 204 Query: 387 SYNDTYGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRL 446 +ND YGH++GD L+ A ++ L R +D A RYGGEE V+L ++ ++AQRL Sbjct: 205 KFNDQYGHQMGDHALRVAAGVLNAAL-RPSDFAVRYGGEELTVILPDSNATTGRMVAQRL 263 Query: 447 CDAVYSRLIVHATS-PLRVVTISVGVATLEREHHRRVEDVLNAADAALYRAKREGRNAV 504 C+ + ++ PL +T S G+ATL+ +H + ED++ ADAALYRAK GRN + Sbjct: 264 CERMREAVVFEDMHVPLPHLTASFGIATLDAQHDQ--EDLVTRADAALYRAKEAGRNQI 320 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 10/178 (5%) Query: 332 VTIEKRLEELALTDGLTGLLNRRALDEALQAAWERCRRNLHSTFSVLFIDVDFFKSYNDT 391 + ++K LE L+ DGLTG+ NRR D + A W + N H SV+ +D+D+FK YND Sbjct: 104 IDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLN-HQPLSVIMLDIDYFKQYNDH 162 Query: 392 YGHKLGDAVLQEVAQAISENLPRNTDCAGRYGGEEFVVLLELTDLQGACLMAQRLCDAVY 451 YGH GD L+ VA +S R+ D R+GGEEF+++L TD A +A+R + Sbjct: 163 YGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAERCRTLIC 222 Query: 452 SRLIVHATSP-LRVVTISVGVATL----EREHHRRVEDVLNAADAALYRAKREGRNAV 504 I H S + ++T+S+GV T+ + + R +E+V D LY+AK+ GRN + Sbjct: 223 KEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEV----DKRLYQAKQRGRNCI 276 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 822,205 Number of extensions: 32158 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 33 Length of query: 510 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 424 Effective length of database: 716,977 Effective search space: 303998248 Effective search space used: 303998248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)