BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4501.p (466 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimon... 89 3e-19 gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 80 2e-16 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 77 2e-15 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 76 3e-15 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 75 7e-15 >gi|134095936|ref|YP_001101011.1| sensor kinase PilS [Herminiimonas arsenicoxydans] Length = 533 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 14/210 (6%) Query: 237 AQSERLATLGRVAAGMAHEIRNPIGAMRMKAENALAAPPQVRQTRVTGALEMVVSQTERL 296 AQ +LA++GR+ A +AHE+RNP+ A+ A +L + ++ +R L ++ RL Sbjct: 305 AQQLKLASMGRLTASIAHEVRNPLSAIGHAA--SLLSEEELNASR-QRLLTIISENVARL 361 Query: 297 DALVASLLALAQPFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPSFTGGLAT 356 + ++ +L L++ + L L D+ AEL E H VQ + I + G +A Sbjct: 362 NRMIEDILKLSRKAHQYHEPLCLGLLFDD---VLAELHEMHAVQ-EGMIAI----GDMAP 413 Query: 357 SA--LDPVQMARALDNLLLNALAHCS-AGGRIEIGARRQSNGRLLLWVADDGPGVPAELR 413 DP+ + + NLL NAL + S A G I RL L V DDGP + + +R Sbjct: 414 HKVRFDPLHLREIVLNLLTNALRYASGAPGSIRAYIAPGVGHRLELHVQDDGPQITSAVR 473 Query: 414 DSLFDPFVSQRSGGTGLGLVLVREIVHAHG 443 LF+PF + S GTGLGL L RE+ +G Sbjct: 474 AHLFEPFYTTSSKGTGLGLYLARELCLNNG 503 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 17/236 (7%) Query: 235 QLAQSERLATLGRVAAGMAHEIRNPIGAMRMKAE---NALAAPPQVRQTRVTGALEMVVS 291 QL +E+LA +G + AG+AHEI NP+ ++ + + L A T V G L ++ Sbjct: 449 QLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAA----TPVQGELRLMDQ 504 Query: 292 QTERLDALVASLLALAQPFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPSFT 351 Q R++ +V LL A P + V +A +DE L +H + Q+ I++ Sbjct: 505 QIHRINTIVTKLLQFASPGEFAGYVEAIA--VDEVVVDTLVLV-RHLLN-QSNIEVVHNR 560 Query: 352 GGLATSALDPVQMARALDNLLLNALAHCSAGGRIEIGAR---RQSNGR-LLLWVADDGPG 407 ++ ++ + L NL NA+ GGR+ I +R + R + + V D G G Sbjct: 561 HATLAVHINRGELQQVLINLFTNAVHAMKNGGRLTIESRDWIDDAGARGVTINVIDTGAG 620 Query: 408 VPAELRDSLFDP-FVSQRSGGTGLGLVLVREIVHAHGGEITLAS-AARGARFEMEL 461 + E + +FD F ++R GGTGLGL + +V +GG IT+ S G F + L Sbjct: 621 IKKEDQARIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVKSEEGVGTEFTVRL 676 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 19/225 (8%) Query: 239 SERLATLGRVAAGMAHEIRNPIGAMRMKAENALAAPPQVRQTRVTGALEMVVSQTERLDA 298 S+ + R A AH+++ P+ MRM++E AL Q + +LE + ++ Sbjct: 269 SQSIKVQKRFIADAAHQMKTPLAGMRMQSELALR---QTDHAEIHKSLEQLAKSSKSATR 325 Query: 299 LVASLLALAQ-----PFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPSFTGG 353 +V LLALA+ P QVL+L+ + Q Q IDL Sbjct: 326 MVNQLLALARAENQTPQTKPMQVLELSELARDTVQNWV------QTSFNRKIDLGFEQPD 379 Query: 354 LATSAL-DPVQMARALDNLLLNALAHCSAGGRIEIGAR-RQSNGRLLLWVADDGPGVPAE 411 A A D + L+NL+ NAL++ AGG + R Q G L V D+GPG+ Sbjct: 380 EAVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAGLAFLEVEDNGPGIAPH 439 Query: 412 LRDSLFDPF---VSQRSGGTGLGLVLVREIVHAHGGEITLASAAR 453 R +F+ F + G+GLGL +VREI H EI + + R Sbjct: 440 ERSHIFERFYRILGSNVEGSGLGLAIVREIALQHNAEIEILNNPR 484 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 103/229 (44%), Gaps = 25/229 (10%) Query: 246 GRVAAGMAHEIRNPIGAMRMKAENALAAPPQVRQTRVTGALEMVVSQTERLDALVASLLA 305 GR A AH++R P+ ++ E AL + T+V AL + + ERL LV+ LL+ Sbjct: 227 GRFIADTAHQLRTPVAGLKAHIELALR---ENDLTQVKRALGHLYTSAERLSRLVSQLLS 283 Query: 306 LA--QPFQVQRQV--LDLAAWIDERRQAHAELAEKHQVQLQAAIDL---PSFTGGLATSA 358 LA +P V DL Q LA K Q+ L D P G A Sbjct: 284 LARNEPNNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDL--GFDTAGQPVLLNGEAA-- 339 Query: 359 LDPVQMARALDNLLLNALAHCSAGGRIEIGARRQSNGRLLLWVADDGPGVPAELRDSLFD 418 ++ ++NL+ NA+ + GGR+ + R+ + L+ V+DDG +P E R +F+ Sbjct: 340 ----RVTEMINNLVDNAIRYTPPGGRVTVHVRQDEHAHLI--VSDDGARIPVEERTRIFE 393 Query: 419 PF---VSQRSGGTGLGLVLVREIVHAHGGEITLASAARGA--RFEMELP 462 F + G+GLGL +V EI H ITL G F + P Sbjct: 394 RFHRLLGSHEEGSGLGLAIVHEIATLHNATITLEDDVDGVGNTFTVSFP 442 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 26/237 (10%) Query: 238 QSERLATLGRVAAGMAHEIRNPIGAMRMKAEN-ALAAPPQVR-QTRVTGALEMVVSQTER 295 +SERL + + ++H++R P+ ++ +E+ ++ PP Q + AL + R Sbjct: 680 ESERLR--NSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALH---DEARR 734 Query: 296 LDALVASLLALAQ----PFQVQRQVLDLAAWIDERRQAHAELAEKHQVQLQAAIDLPSFT 351 + LV++LL +A+ + Q L + +A H+++ + A DLP Sbjct: 735 MSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVR 794 Query: 352 GGLATSALDPVQMARALDNLLLNALAHCSAGGRIEIGARRQSNGRLL-LWVADDGPGVPA 410 D V + R L NL+ NA + AG RI I A + +GR L + V D+GPG+PA Sbjct: 795 -------FDAVLIERVLCNLIENAAKYTPAGSRIVIAA--EISGRFLEVSVYDNGPGLPA 845 Query: 411 ELRDSLFDPFV----SQRSGGTGLGLVLVREIVHAHGGEITLA-SAARGARFEMELP 462 +++FD F + G GLGL + R IV AH G I A S GA LP Sbjct: 846 GQEEAIFDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 757,794 Number of extensions: 28066 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 21 Length of query: 466 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 381 Effective length of database: 720,272 Effective search space: 274423632 Effective search space used: 274423632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)