BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4500.p (447 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096598|ref|YP_001101673.1| two-component regulatory system... 305 3e-84 gi|134094186|ref|YP_001099261.1| two-component system response r... 297 9e-82 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 293 1e-80 gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Hermin... 259 2e-70 gi|134094587|ref|YP_001099662.1| anaerobic nitric oxide reductas... 238 6e-64 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 305 bits (780), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 188/452 (41%), Positives = 271/452 (59%), Gaps = 25/452 (5%) Query: 4 ILIVDDDLAFRGSLAETVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADEDGLVF 63 ILIVDD+ R L T+ D V S A LL + D I+D + + G+ + Sbjct: 39 ILIVDDEPGMRSFLQRTLEDRCSRVEAVDSVEAASVLLDSRHFDLIILDNSLPGKSGVEW 98 Query: 64 LQRAPAIA-PIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERA-----LR 117 L A+ +++TA+A + I A+R GA D L KP ++ + R LR Sbjct: 99 LHEMRALGLHNDVVLITAFADLETAIHALRAGAADFLLKPFRVNQILSAIGRCFDRTHLR 158 Query: 118 QSAALSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELV 177 + + G + LVG+S A++ V + I R AT +TVLI GE+GTGKE+ Sbjct: 159 RENFILRRELDSHVDFGVD--GLVGNSTALQPVRETIKRLATVSSTVLITGESGTGKEIA 216 Query: 178 ARALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLF 237 ARA+H SR+ FV VNC A+ ++IESELFGHVKGAFSGA+++R G F A GGTLF Sbjct: 217 ARAMHYLSSRSGNHFVPVNCGAVAPDIIESELFGHVKGAFSGAASSREGLFFYAQGGTLF 276 Query: 238 LDEIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDL 297 LDE+ ++ Q K+LRVL+E+++ PVG + + VDVRVIAAT+R++ + ++EGRFR+DL Sbjct: 277 LDEVAELPMAMQVKLLRVLEEKKIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDL 336 Query: 298 WYRLQVLPIKVPPLRERPGDILAIAEHFLRQHG---GDSPKRISPAAARRLLQHSWPGNV 354 +YRL V+ + +PPLRER DI A+A +F+RQ G P++ A ++ H+WPGNV Sbjct: 337 YYRLNVVQVHMPPLRERADDIPALAAYFVRQLAPQLGVPPQQPDNALLAAMVSHAWPGNV 396 Query: 355 RELRNTMERAAVMSHGACIEVEHIELPELAPASPESAVAIDWEGSLAQAVAQVERVMLQR 414 RELRN +ER ++ + +PE+A S +VAID GS ++ +E+ + + Sbjct: 397 RELRNLIERWLILGN----------IPEIAIGS--KSVAID-NGS-DVSLQAIEKQHILK 442 Query: 415 ALAAANGNRAEAARRLGISRQQLYRKLEEQGM 446 L AA+GN+ EAARRLG+SR+ L RK E G+ Sbjct: 443 ILGAADGNKTEAARRLGLSRKTLERKCAEWGV 474 >gi|134094186|ref|YP_001099261.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 473 Score = 297 bits (760), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 186/461 (40%), Positives = 260/461 (56%), Gaps = 70/461 (15%) Query: 50 IVDLRMADEDGLVFLQRAPAIAP-IPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAAL 108 + D+RM E GL LQ A P +P I++TA++ D+ + A + GAF++L KP Sbjct: 13 VSDIRMPGETGLELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDKA 72 Query: 109 VETLERALRQSA-ALSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLIL 167 VE + RAL +S S S ETP E++G + AM+ VF+ IGR + S+ TVLI Sbjct: 73 VELIRRALEESLRETSIEQVSAETP------EILGQAPAMQDVFRAIGRLSQSNVTVLIT 126 Query: 168 GETGTGKELVARALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGR 227 GE+G+GKELVARALH++ RA +PF+A+N AAIP +L+ESELFGH +GAF+GA A+R GR Sbjct: 127 GESGSGKELVARALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGR 186 Query: 228 FQEADGGTLFLDEIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQE 287 F++ADGGTLFLDEIGDM Q ++LRVL + VGG+Q +K +VRVIAATH++L Q Sbjct: 187 FEQADGGTLFLDEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEQR 246 Query: 288 IREGRFREDLWYRLQVLPIKVPPLRERPGDILAIAEHFLRQHG---GDSPKRISPAAARR 344 +REG FREDL++RL V+ +++P LRER DI + HFL Q G KR+S A + Sbjct: 247 VREGLFREDLYHRLNVIRLRLPSLRERREDIPILTRHFLAQSAKQLGVEVKRMSDGAMQF 306 Query: 345 LLQHSWPGNVRELRNTMERAAVMSHGACIEVEHI--ELPE-----------------LAP 385 L PGNVR+L N VM+ G +E + + EL E ++ Sbjct: 307 LTNLELPGNVRQLENLCNWITVMAPGQTVEAKDLPHELTEGQAFSASGQAGANAVHGISY 366 Query: 386 ASPES-------------------AVAIDWEGSLAQAVAQVE------------------ 408 +PES A + E S A+ ++E Sbjct: 367 TTPESDAMTLGGMTQTSSFPNAGGAASAPLESSSWIALLEMEAASLLAAGKPEVMDALGR 426 Query: 409 ---RVMLQRALAAANGNRAEAARRLGISRQQLYRKLEEQGM 446 +++ AL +G + +AA RLGI R + RK+ E G+ Sbjct: 427 QFESTLIKMALKHTHGRKNDAAVRLGIGRNTITRKIHELGI 467 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 293 bits (750), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 190/465 (40%), Positives = 269/465 (57%), Gaps = 27/465 (5%) Query: 3 RILIVDDDLAFRGSLAETVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADEDGLV 62 RIL+VDD+ R L T+ +G ++ A + A LA + D+R+ D G+ Sbjct: 5 RILVVDDEADLRELLEITLIKMGLDIDSAATLEAARDYLAKTEYALVLTDMRLPDGLGIE 64 Query: 63 FLQRAPA-IAPIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQSAA 121 +Q A P ++TA+ S DN + A++ GAFD+L+KPV L + ALR S Sbjct: 65 LVQEVTAQYKNTPIAVITAFGSADNAVIALKAGAFDYLSKPVGLEQLRVMVRSALRISQG 124 Query: 122 LSAPPASQE-TPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVARA 180 + + +Q+ P + R L+G S+AM+ + QI R A S A V I GE+G+GKEL AR Sbjct: 125 VVSDKVNQKAIAPTALR--LMGQSDAMQALRAQIARLARSMAPVAISGESGSGKELAARD 182 Query: 181 LHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLFLDE 240 +H +R +PFVAVNC AIP L+E+E FG+ KGAF+GA+ +R G FQ A+GGTL LDE Sbjct: 183 IHAQSARNDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDRDGFFQAANGGTLLLDE 242 Query: 241 IGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLWYR 300 + D+ Q K+LR +QER + VG VDVR+I+ATH++L + +G FR+DL+YR Sbjct: 243 VADLPLAMQVKLLRAIQERCVRKVGATVEEPVDVRIISATHQNLHDCVGKGTFRQDLYYR 302 Query: 301 LQVLPIKVPPLRERPGDILAIAEHFLRQHGGDSPKRISPAAARRLLQHSWPGNVRELRNT 360 L V+ + +PPLRER DI +A+ L + GG +SPAA L +S+PGNVREL N Sbjct: 303 LNVIELHLPPLRERLDDIGLLAQAILVRLGGGEQAALSPAALAALCSYSFPGNVRELENI 362 Query: 361 MERAAVMSHGACIEVEHIEL---PEL--APASPESAV------------------AIDWE 397 +ERA ++ IEV + L P L APAS SAV + D Sbjct: 363 LERALAFANDGLIEVADLALKASPSLNPAPASTPSAVSQPISSEVEAEALATLVASSDIP 422 Query: 398 GSLAQAVAQVERVMLQRALAAANGNRAEAARRLGISRQQLYRKLE 442 SL + +VER +++RALA NR +AA LGIS +QL +++ Sbjct: 423 ESLPDHLDEVEREIIRRALAKTRFNRTQAAELLGISFRQLRYRMQ 467 >gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Herminiimonas arsenicoxydans] Length = 454 Score = 259 bits (662), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 157/461 (34%), Positives = 255/461 (55%), Gaps = 27/461 (5%) Query: 1 MARILIVDDDLAFRGSLAE--TVGDLGHEVLEAGSTAAGLKLLAAHGVDAAIVDLRMADE 58 M +L+V+DD S+ + + + HE ++ S A L + D + D+R+ D Sbjct: 1 MTSVLLVEDDAIMGESICDRFAIEKIDHEWVQ--SATAALSRMKQRKFDCLVSDIRLPDL 58 Query: 59 DGLVFLQRAPAIAPI--PCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 G + +R + P I +T Y + + GA D+L KP+ +E++ + Sbjct: 59 SGEMMFERGKESGNLDYPAIFITGYGTQQQAERLLAKGAADYLVKPLD----LESMIGKI 114 Query: 117 RQSAALSAPPASQETPPGSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKEL 176 R A S+P + P +G S ++++ + + + +VL+ GE+G+GKE Sbjct: 115 RLLTAGSSPIITASKPT-------LGISREIQRLEEMVVKMGEQWTSVLVTGESGSGKEE 167 Query: 177 VARALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTL 236 +AR LHR+ PF+AVNC A+P ++E+ELFG+ +GAF+GA+ + G F++A+ GT+ Sbjct: 168 LARLLHRSAQAGNNPFIAVNCGALPEGMMEAELFGYERGAFTGAAKSHRGYFEQANNGTV 227 Query: 237 FLDEIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFRED 296 FLDEIG++A Q ++LRVLQE LT +G + +KV+ R+IAATHRD+ +E++ GRFRED Sbjct: 228 FLDEIGELAPAAQVRLLRVLQEHTLTRLGSEKPIKVNFRLIAATHRDVREEVKAGRFRED 287 Query: 297 LWYRLQVLPIKVPPLRERPGDILAIAEHFLRQHGG---DSPKRISPAAARRLLQHSWPGN 353 L+YR+ ++ ++VPPLRER D+ +A FL Q SP+ +S L W GN Sbjct: 288 LYYRINIIQLRVPPLRERLDDVAWLARLFLEQWNQAHPTSPRMLSEPTITFLCTLPWRGN 347 Query: 354 VRELRNTMERAAVMSHGACIEVEHIE-------LPELAPASPESAVAIDWEGSLAQAVAQ 406 +REL++ +ERA +++ + + E L PA+ A+A LA+ + Sbjct: 348 IRELKHAIERACLLTAHPLLRPDDFEMQISEEKLGTFHPATEVPAMAQPHIIPLAEFNRE 407 Query: 407 VERVMLQRALAAANGNRAEAARRLGISRQQLYRKLEEQGMS 447 ER L + LA +G A+ A LGISR+ L+ K + G+ Sbjct: 408 QERRYLVQVLAHYSGQMAQTAAALGISRKTLWEKTRKLGIK 448 >gi|134094587|ref|YP_001099662.1| anaerobic nitric oxide reductase transcription regulator [Herminiimonas arsenicoxydans] Length = 507 Score = 238 bits (606), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 159/406 (39%), Positives = 234/406 (57%), Gaps = 34/406 (8%) Query: 72 PIP---CIMLTAYASGDN----TIEAIRLGAFDHL--TKPVPRAALVETLERALRQSAAL 122 P+P C+ ++ + G T++A+++G FD + T+ + ++E R R A + Sbjct: 103 PLPVHDCMGISLHVEGQPWGVLTLDALQIGTFDDIAQTELQQLSMVIEASIRITRLEAEI 162 Query: 123 SAPPASQETPP---GSERNELVGDSEAMRQVFKQIGRAATSDATVLILGETGTGKELVAR 179 A ++ P + +E++G SEA+ Q+ ++ A S+ VL+LGETG GKEL A Sbjct: 163 RALRLTRGDAPVDSSKQESEIIGQSEAIGQLLHELRVVADSELPVLLLGETGVGKELFAH 222 Query: 180 ALHRNGSRAKRPFVAVNCAAIPAELIESELFGHVKGAFSGASANRIGRFQEADGGTLFLD 239 LHR+ R +P V VNCAA+P L ESELFGH KGAFSGA ++R GRF+ A+GGTLFLD Sbjct: 223 RLHRHSRRHAKPLVHVNCAALPESLAESELFGHAKGAFSGAISDRPGRFEAAEGGTLFLD 282 Query: 240 EIGDMAAPTQAKILRVLQERELTPVGGNQSVKVDVRVIAATHRDLPQEIREGRFREDLWY 299 E+G++ QAK+LR LQ E+ +G ++ +V+VRVIAAT+R+L +R+G FR DL++ Sbjct: 283 EVGELPLAVQAKLLRTLQNGEIQRLGADRPRRVNVRVIAATNRNLRDLVRDGAFRADLYH 342 Query: 300 RLQVLPIKVPPLRERPGDILAIAEHFL---RQHGGDSPKRISPAAARRLLQHSWPGNVRE 356 RL V P+ +PPLRER D+L +A FL R G R+S A L ++ WPGNVRE Sbjct: 343 RLSVYPLPIPPLRERGNDVLLLAGRFLELNRARLGLRSLRLSTDAQAALRRYRWPGNVRE 402 Query: 357 LRNTMERAAVMSHGACIEVEHIEL--------------PELA--PASPESAVAIDWEGSL 400 L + + RAA+ + + I P L A P +A+ SL Sbjct: 403 LEHVISRAALKTLSRGVNRNDIITLEAELLDLDALELPPALTTQTALPGITLAV---SSL 459 Query: 401 AQAVAQVERVMLQRALAAANGNRAEAARRLGISRQQLYRKLEEQGM 446 AVA ER +Q+AL A+ G+ A+AAR+L + L++ G+ Sbjct: 460 RDAVATCERHSIQQALDASGGSWAQAARQLDVDASNLHKLARRLGL 505 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 792,728 Number of extensions: 32687 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 13 Length of query: 447 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 362 Effective length of database: 720,272 Effective search space: 260738464 Effective search space used: 260738464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)