BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4498.p (252 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 73 1e-14 gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 67 7e-13 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 62 3e-11 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 57 8e-10 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 57 1e-09 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 1/175 (0%) Query: 8 LFITGGTSGIGRALAEAFHKLGNQVIIGGRRKALLDEVTAA-NPGMDAIEFDVSSLASID 66 + ITG +SG G +A F + G++VI GRRK LD++ A + + DV+ SI Sbjct: 3 VLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVLTVAMDVTDKHSIT 62 Query: 67 AAAATLKARYPKLNVLINNAGIMPFDDAGSTIDDQVSRNILDTNLLGPIRLTSALIELLK 126 AA +L A + +++VLINNAG+ T + +++TN G + +T ++ + Sbjct: 63 AALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQWETMIETNCKGLVTVTRLVLPDML 122 Query: 127 AQPSATIIHNTSVLAYVPLAVTAVYSASKAALHSYAMSQRFMLRHTHVRVQEIAP 181 + TII+ S VY A+KA + + ++ R L T VR +AP Sbjct: 123 KRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAP 177 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 67.4 bits (163), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 10/216 (4%) Query: 8 LFITGGTSGIGRALAEAFHKLGNQVIIGGRRKALLDEVTAANPGMD---AIEFDVSSLAS 64 +FITG +SG+G ALA + G + + RR +L E+ A+ P + DVS+ A+ Sbjct: 11 VFITGASSGLGAALARQYANEGATLGLVARRGEVLRELAASLPNAERHRVYALDVSNHAA 70 Query: 65 IDAAAATLKARYPKLNVLINNAGIMPFDDAGSTIDDQVSRNILDTNLLGPIRLTSALIEL 124 + AAA A ++++I NAGI T D V I TN+ + + I Sbjct: 71 LANAAADFIAAAQGIDIVIANAGISRGTLTEYTEDLHVFEKIFATNVTATVATFAPFIAT 130 Query: 125 LKAQPSAT-----IIHNTSVLAYVPLAVTAVYSASKAALHSYAMSQRFMLRHTHVRVQEI 179 +KAQ +A ++ SV L YSASKAA+ SY S R L+ ++V I Sbjct: 131 MKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELQKDGIKVVTI 190 Query: 180 APPWVDTDL--VKKSGDPRAMPLEAFIAETMSKLAS 213 AP ++DT + V P MP+E F ++ +A+ Sbjct: 191 APGYIDTPMTQVNDYAMPFLMPVEKFAERGVATIAA 226 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 6/193 (3%) Query: 1 MKLTDNTLFITGGTSGIGRALAEAFHKLGNQVIIGGRRK---ALLDEVTAANPGMDAIEF 57 ++L +TG + GIGRA+A+A K G +VI + A + E A + + Sbjct: 4 VELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESG--KGVVL 61 Query: 58 DVSSLASIDAAAATLKARYPKLNVLINNAGIMPFDDAGSTIDDQVSRNILDTNLLGPIRL 117 DV+ A A ++ + + +L+NNAGI D + D+ +++ TNL RL Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQ-DQLAMRMKDEEWDSVIATNLTSVGRL 120 Query: 118 TSALIELLKAQPSATIIHNTSVLAYVPLAVTAVYSASKAALHSYAMSQRFMLRHTHVRVQ 177 + A++ + II+ TSV+ A Y+A+KA + + + + ++ V Sbjct: 121 SRAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 178 EIAPPWVDTDLVK 190 +AP ++DTD+ K Sbjct: 181 CVAPGFIDTDMTK 193 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 57.0 bits (136), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 12/189 (6%) Query: 9 FITGGTSGIGRALAEAFHKLGNQVII-----GGRRKALLDEVTAANPGMDAIEFDVSSLA 63 +TGG G+G A+ LG QV+ L + A+ A DVS Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVSDYD 65 Query: 64 SIDAAAATLKARYPKLNVLINNAGI---MPFDDAGSTIDDQVSRNILDTNLLGPIRLTSA 120 S A +K +++VL+NNAGI M F T D V + TNL +T Sbjct: 66 SAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAV----MGTNLDSVFNMTKP 121 Query: 121 LIELLKAQPSATIIHNTSVLAYVPLAVTAVYSASKAALHSYAMSQRFMLRHTHVRVQEIA 180 + + + + II+ +SV A YSA+KA +H + + + V V I+ Sbjct: 122 VCDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 181 PPWVDTDLV 189 P ++ T +V Sbjct: 182 PGYIGTKMV 190 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 17/206 (8%) Query: 3 LTDNTLFITGGTSGIGRALAEAFHKLGNQVIIGGRRKALLDEVTAANPGMD---AIEF-- 57 L T ITG TSGIG +A A + G +++ G A +E+ A G+ ++ Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDA--NEIAALQAGLTQDYGVQSTY 63 Query: 58 ---DVSSLASIDAAAATLKARYPKLNVLINNAGIMPFDDAGSTIDD---QVSRNILDTNL 111 D+S I A A++ +++L+NNAGI D I+D + I+ NL Sbjct: 64 HPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVAD----IEDFPVEKWDAIIAINL 119 Query: 112 LGPIRLTSALIELLKAQPSATIIHNTSVLAYVPLAVTAVYSASKAALHSYAMSQRFMLRH 171 T + +K + II+ S V A + Y A+K + + Sbjct: 120 SSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQ 179 Query: 172 THVRVQEIAPPWVDTDLVKKSGDPRA 197 T V I P WV T LV+K D RA Sbjct: 180 TGVTCNAICPGWVLTPLVQKQVDVRA 205 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 465,031 Number of extensions: 17936 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 10 Length of query: 252 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 172 Effective length of database: 736,747 Effective search space: 126720484 Effective search space used: 126720484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)