BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4497.p (269 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 89 2e-19 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 85 4e-18 gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 76 1e-15 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 75 5e-15 gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 68 5e-13 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%) Query: 13 LITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGNAQ 72 LITGASSG GA A + A+QG+ +I R ++RL+ LA + V ++ D+ + Sbjct: 4 LITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELG----AAVLTVAMDVTDKH 59 Query: 73 SLAQVEDKLRRD-ASITLLVNNAGIGTHT-PLLQSDVEHMTDMIALNVTAPTRLTYAAVP 130 S+ D L + I +L+NNAG+ P + +E MI N +T +P Sbjct: 60 SITAALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQWETMIETNCKGLVTVTRLVLP 119 Query: 131 GFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQAVLPG- 189 + R RG IINI S G VYG +KAFV F+ +L +L GV+ + PG Sbjct: 120 DMLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPGL 179 Query: 190 ATATDF 195 A T+F Sbjct: 180 AGGTEF 185 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 5/185 (2%) Query: 12 ALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGNA 71 AL+TGAS GIG A LA+QG +I A + A++E ++ + V D+ +A Sbjct: 11 ALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVV----LDVNDA 66 Query: 72 -QSLAQVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVTAPTRLTYAAVP 130 +S+A +++ + ++T+LVNNAGI ++ E +IA N+T+ RL+ A + Sbjct: 67 ARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVLR 126 Query: 131 GFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQAVLPGA 190 G + G IINI+S+VG Y +KA V S++L E+ + + V V PG Sbjct: 127 GMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGF 186 Query: 191 TATDF 195 TD Sbjct: 187 IDTDM 191 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 13/189 (6%) Query: 11 TALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLSADLGN 70 TAL+ GAS G+G A+ LA +G + LVARN E L A A I + + +++ D+ Sbjct: 9 TALVCGASRGLGRGCAEALAAEGVHVTLVARNLEVLEATAMDIRSSASGVITIVACDITT 68 Query: 71 AQSLAQVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMT--DMIAL---NVTAPTRLT 125 A+ AQ L +LV NAG G T D T D IA N+ P L Sbjct: 69 AEGRAQA---LHICPQPDILVTNAG-GPPT----GDFHDWTRDDWIAALDANMLTPIELI 120 Query: 126 YAAVPGFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQGVQVQA 185 A V G +ARG G IINI+S AP + G+ G+++ + F L + Q V + Sbjct: 121 KATVDGMMARGFGRIINITSSAVKAPISVLGLSNGARSGLTGFVAGLARKTVAQNVTINN 180 Query: 186 VLPGATATD 194 +LPG TD Sbjct: 181 LLPGPFETD 189 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 74.7 bits (182), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 2/189 (1%) Query: 3 QTTTTQRGTALITGASSGIGAVYADRLARQGYDLILVA-RNRERLNALAERISNDTRRTV 61 Q TT Q TALITG++SGIG A LA+QG ++L + + AL ++ D Sbjct: 2 QNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQS 61 Query: 62 EVLSADLGNAQSLA-QVEDKLRRDASITLLVNNAGIGTHTPLLQSDVEHMTDMIALNVTA 120 AD+ Q +A ++ + S+ +LVNNAGI + VE +IA+N+++ Sbjct: 62 TYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSS 121 Query: 121 PTRLTYAAVPGFVARGRGAIINISSIVGVAPEILNGVYGGSKAFVLAFSQSLHHELADQG 180 T A+P + G IINI+S G+ Y +K ++ S+ E A G Sbjct: 122 AFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTG 181 Query: 181 VQVQAVLPG 189 V A+ PG Sbjct: 182 VTCNAICPG 190 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 67.8 bits (164), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 24/226 (10%) Query: 6 TTQRGTALITGASSGIGAVYADRLARQGYDLILVARNRERLNALAERISNDTRRTVEVLS 65 + Q ITGASSG+GA A + A +G L LVAR E L LA + N R V L Sbjct: 5 SMQAKRVFITGASSGLGAALARQYANEGATLGLVARRGEVLRELAASLPNAERHRVYAL- 63 Query: 66 ADLGN-AQSLAQVEDKLRRDASITLLVNNAGI--GTHTPLLQSDVEHMTDMIALNVTAPT 122 D+ N A D + I +++ NAGI GT T + D+ + A NVTA Sbjct: 64 -DVSNHAALANAAADFIAAAQGIDIVIANAGISRGTLTEYTE-DLHVFEKIFATNVTA-- 119 Query: 123 RLTYAAVPGFVARGRGA---------IINISSIVGVAPEILNGVYGGSKAFVLAFSQSLH 173 T A F+A + ++ I S+ G+ G Y SKA V+++ +SL Sbjct: 120 --TVATFAPFIATMKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLR 177 Query: 174 HELADQGVQVQAVLPGATATDFWAIGGLPLEHLDPAIVMPAEQMVD 219 EL G++V + PG T + + L MP E+ + Sbjct: 178 VELQKDGIKVVTIAPGYIDTPMTQVNDYAMPFL-----MPVEKFAE 218 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 502,493 Number of extensions: 21034 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 12 Length of query: 269 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 189 Effective length of database: 736,747 Effective search space: 139245183 Effective search space used: 139245183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)