BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4489.p
         (123 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094064|ref|YP_001099139.1| putative cytochrome c [Herminii...   154   1e-39
gi|134094705|ref|YP_001099780.1| putative cytochrome c [Herminii...    79   5e-17

>gi|134094064|ref|YP_001099139.1| putative cytochrome c
           [Herminiimonas arsenicoxydans]
          Length = 122

 Score =  154 bits (388), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 87/108 (80%)

Query: 14  APLTTHAAGDPVSGRAAFAKCASCHAVGPSARGGFGPQLTNVIGRKAGSTTDFKYSPAMA 73
           A    HAAGD ++G+AAFAKCASCH VG SARG FGPQL  ++GR AG+T DFKYS AM 
Sbjct: 14  AGYQAHAAGDVIAGKAAFAKCASCHQVGRSARGVFGPQLNGIVGRPAGATKDFKYSAAMM 73

Query: 74  SAGFVWTEDKLRAFLKAPSDVVPGNKMRFWGIGSDQQIDDILAYLRTF 121
           ++  VW+E  LRAFLK+P+DVVP NKMRF+GIG+D+QIDD+LAYL  +
Sbjct: 74  NSRIVWSEASLRAFLKSPNDVVPENKMRFFGIGNDRQIDDLLAYLSQY 121


>gi|134094705|ref|YP_001099780.1| putative cytochrome c
           [Herminiimonas arsenicoxydans]
          Length = 136

 Score = 79.3 bits (194), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 26  SGRAAFAKCASCHAVGPSARGGFGPQLTNVIGRKAGSTTDFKYSPAMASAGFVWTEDKLR 85
           +G A +A+C +CHA+   A    GP+   + GR+AGS   F YS AM  +  VW E  L 
Sbjct: 36  AGEAIYARCLACHAL---AYDRTGPRHCGLFGRRAGSVKGFNYSDAMKHSNIVWNEKTLN 92

Query: 86  AFLKAPSDVVPGNKMRFWGIGSDQQIDDILAYLRTFN 122
            FL  P+  VPG  M + G+ S ++  D+++YL+  N
Sbjct: 93  LFLSNPTKTVPGTTMTYAGVTSQKERSDLISYLKQAN 129


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 238,083
Number of extensions: 9326
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 52
Effective length of database: 766,402
Effective search space: 39852904
Effective search space used: 39852904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)