BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4482.p (516 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 414 e-117 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 404 e-114 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 404 e-114 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 399 e-112 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 372 e-104 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 414 bits (1063), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/531 (49%), Positives = 354/531 (66%), Gaps = 40/531 (7%) Query: 4 FNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDM---------ASNWLP--- 51 F NLKI +L ++F ++VL + V ++ L+ V +A+ M A W+ Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIE 62 Query: 52 --TIKAAQSIQASLPRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISE 109 T++ ++ S P Q ++A++ A ++KQ+ E L+ Sbjct: 63 TNTVRTFARVRTSDPEQDKILQQEMSAISAA---------------VSKQQDELETLVVS 107 Query: 110 AEEKLAYDKFSKSFASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRS---MLESMDE 166 AE K ++ A+Y + + + A E A+ +NK + ++S++ Sbjct: 108 AEGKKLLATVAEKRATYTAIRDDVMNLREARGAELQNAI----ANKMKPAADAYIQSVEA 163 Query: 167 II--KINDAGSARSDQTANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVS 224 ++ +IN+ A+ + ++ +AR +I L + + LA + R++++PL+ AVS Sbjct: 164 VVNAQINNFEDAKG--RVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVS 221 Query: 225 VAERVAQGDLTVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASG 284 VA VA GDLT +I SKDETG L+ +L+ MNDSL +++VR G D I+TAS +IASG Sbjct: 222 VARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASG 281 Query: 285 NLDLSSRTEQQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQV 344 NLDLSSRTE+QA SLEETAS+MEELT+TVKQNADNARQANQLA +AS +A +GG VVS+V Sbjct: 282 NLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKV 341 Query: 345 VQTMEGITESSSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 V TM+GI S+ +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA Sbjct: 342 VDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 401 Query: 405 QRSAAAAKEIKQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQS 464 QRSAAAAKEIK LIDDSV+KV GS+LV AG TM +VV SV+RVT ++AEI AAS EQS Sbjct: 402 QRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQS 461 Query: 465 TGIEEINRAVTQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 GIE++N+A+ QMD+VTQQNAALVEEAAAAA+SL +QAA L+Q VS+FK++ Sbjct: 462 AGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/518 (49%), Positives = 344/518 (66%), Gaps = 10/518 (1%) Query: 4 FNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQSIQASL 63 N+ I +L+L+ + ++ + G I+ ++ N ++ N +P+ +A S+ L Sbjct: 2 LKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRL 61 Query: 64 PRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALIS----EAEEKLAYDKF 119 + R + L ++ A+ P E E + + +K + + ++ +S EE+ D+ Sbjct: 62 LQAR-AGLNLV-AMRPHE-EGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEV 118 Query: 120 SKSFASYL-ELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARS 178 + YL E ++ L AG+ EE + F+S+ +S DE++++ +A Sbjct: 119 TAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATG 178 Query: 179 DQTANDVFNAARTW-IIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQ 237 Q + +F+ R ++G+L ++ +A A + RA++ PL E + + +A GDLT Sbjct: 179 YQDSQTLFHYFRIIAVVGVLLGLIGVAI-YAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 238 INTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAG 297 I S++E G LM L+ M L V++VR G+ AISTA+ EIA+GNLDLSSRTEQQA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 298 SLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSR 357 SLEETAS+MEELT+TVKQN DNARQANQLA SAS +A +GG VVS VV TM+ I S+ + Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 358 IADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQL 417 I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 418 IDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQM 477 IDDSV KV AG++LV AG TM++VV SV+RVT +++EI AAS EQS GIE++N A+ QM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 478 DEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 DEVTQQNAALVE+AAAAA SL+DQA LS VVSVFK++ Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 404 bits (1038), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/514 (49%), Positives = 356/514 (69%), Gaps = 9/514 (1%) Query: 6 NLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMASNWLPTIKAAQS--IQASL 63 N+KI +L L F +++L A+G I+ L+ +N AS + + L K+AQ+ + S+ Sbjct: 5 NMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSV 64 Query: 64 PRMRISELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEAEEKLAYDKFSKSF 123 R L ++ A P +E KAI ++ +T+ + + E I+ +EK + + +K Sbjct: 65 NASRT--LALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKR 122 Query: 124 ASYLELDKKLAEISGAGKEEEARALFKGDSNKTFRSMLESMDEIIKINDAGSARSDQTAN 183 ++Y+++ K + + G EA + + ++S+ ++ + +D++ Sbjct: 123 SAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADESIT 182 Query: 184 DVFNAARTWIIGLLATIVVIAFG--LAAAVARAVSRPLNEAVSVAERVAQGDLTVQINTA 241 D + + R +I + ++ I G +A + ++RPL+EA+ VAE VA+GDLT + + A Sbjct: 183 DDYLSGRMALI--IGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMA 240 Query: 242 -SKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLE 300 ++DE G+L+ +L M +L + V+++R GTD I+TAS EIASGNLDLSSRTEQQA SLE Sbjct: 241 ETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIAD 360 ETAS+MEELT+TVKQNADN+RQANQLA +AS +A +GG VVSQVV TM I S+ +I D Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGD 420 Query: 421 SVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEV 480 SVEKV AGS+LV AG TM ++V V+RV ++AEI+AAS EQS GIE++N+AV+QMD+V Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKI 514 TQQNAALVEEAAAAA+SLQDQA L++ VSVF++ Sbjct: 481 TQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/528 (49%), Positives = 346/528 (65%), Gaps = 30/528 (5%) Query: 4 FNNLKIAKKLILSFAAVIVLTVALGVFAIIELKVVNQASTDMAS---------NWLPTIK 54 NLKI +L L+FA V++L ++ V + L+ V QA+ M W Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQW----H 58 Query: 55 AAQSIQASLPRMRI----SELQMITAVTPAEREDAIKAIKSRLDILTKQRAAYEALISEA 110 A S A RI E+Q + E ++++ +TK + E+LI Sbjct: 59 AGNSANAIRTTARIRSTNQEVQQ-----QFQNEMTAQSVE-----ITKLQNKLESLIHSE 108 Query: 111 EEKLAYDKFSKSFASYLELDKKLAEISGAGK---EEEARALFKGDSNKTFRSMLESMDEI 167 E K Y+++ K++ ++ G EEEA+ + + + +++ ++ Sbjct: 109 EGKKLMSAVGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDV 168 Query: 168 IKINDAGSARSDQTANDVFNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAE 227 + + ++++ + R +++ L A + ++ LA ++R+++RPL AV VA Sbjct: 169 VDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVAR 228 Query: 228 RVAQGDLTVQINTASKDETGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLD 287 VA GDL +I S DETG L+ +LR MND L K VSEVR G + I+TAS +IA+GNLD Sbjct: 229 TVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLD 288 Query: 288 LSSRTEQQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQT 347 LSSRTE+QA SLEETAS+MEELT+TVKQNADNARQANQLA SAS +A +GG VVSQVV T Sbjct: 289 LSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDT 348 Query: 348 MEGITESSSRIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 ME I S+ +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS Sbjct: 349 MEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRS 408 Query: 408 AAAAKEIKQLIDDSVEKVGAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGI 467 AAAAKEIK LI DSV+KV GS+LV AG TM +VV+SV+RVT +++EI AAS EQS GI Sbjct: 409 AAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGI 468 Query: 468 EEINRAVTQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 E++N+A+ QMD+VTQQNAALVEEAAAAA+SL +QA +L++ VSVFK++ Sbjct: 469 EQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLD 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 215/330 (65%), Positives = 268/330 (81%) Query: 186 FNAARTWIIGLLATIVVIAFGLAAAVARAVSRPLNEAVSVAERVAQGDLTVQINTASKDE 245 F R IG + V++A +A + R ++RPL++AV +A VA GDLT QI+ S +E Sbjct: 184 FVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNE 243 Query: 246 TGMLMHSLRTMNDSLHKIVSEVRYGTDAISTASQEIASGNLDLSSRTEQQAGSLEETASA 305 TG L+ +L+ MNDSL K VS VR GT+ I+ AS EIASGN DLSSRTE QAGSLEETAS+ Sbjct: 244 TGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASS 303 Query: 306 MEELTATVKQNADNARQANQLAASASDIASQGGEVVSQVVQTMEGITESSSRIADIITVI 365 MEELT+TV+QNADNARQANQL SA+++A +GG VVS+VV TM I +SS +I DII VI Sbjct: 304 MEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVI 363 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVEKV 425 D IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LIDDSV KV Sbjct: 364 DSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKV 423 Query: 426 GAGSQLVERAGATMSDVVSSVRRVTGVVAEISAASSEQSTGIEEINRAVTQMDEVTQQNA 485 AGS+LV++AG+TM ++V+SV+ V +++EI++AS EQS GIE++N+A++QMDE+TQQNA Sbjct: 424 DAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNA 483 Query: 486 ALVEEAAAAAQSLQDQAARLSQVVSVFKIE 515 ALVE+AAAAAQS+QDQA LS V++FK++ Sbjct: 484 ALVEQAAAAAQSMQDQAVELSGAVAIFKLD 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.311 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 620,861 Number of extensions: 19072 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 15 Length of query: 516 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 430 Effective length of database: 716,977 Effective search space: 308300110 Effective search space used: 308300110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)