BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4481.p (247 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 147 5e-37 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 133 8e-33 gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 127 6e-31 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 123 7e-30 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 123 8e-30 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 147 bits (371), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 12/229 (5%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 ILIVEDEP + EL+ L AG+ V A + ++ + P LILLD MLP G + Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 78 CRQLRS---FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRN 134 ++R+ F+++P++MLTA++ EED++ GL+ GADDY+ K PFSPRE+ AR+ ++LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTK-PFSPRELTARINALLRR- 125 Query: 135 ALVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRDQ 194 + + Q T + +D S S+ E +++ E +LLK F A P +VFSR Q Sbjct: 126 ----KTPEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQ 181 Query: 195 LLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFA 243 LL+ + D + +R VD H+ LR+ L+ + I+ V VGY + Sbjct: 182 LLDKVWGDHVVIEERTVDVHVLRLRKALK---EAEHLIKTVRSVGYMLS 227 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 133 bits (335), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 133/232 (57%), Gaps = 12/232 (5%) Query: 15 RADILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDG 74 +A IL+VEDE + ELL+ L A + AA + ++ + P LILLD MLP G Sbjct: 5 KATILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSG 64 Query: 75 WEI---CRQLRSFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSML 131 ++ R+ R F +P++MLTA++ EED++ GLE GADDY+ K PFSPRE++ARV ++L Sbjct: 65 LQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTK-PFSPRELIARV-TVL 122 Query: 132 RRNALVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFS 191 ++ + + A +T + P+ +D AS SV + + + E +LLK A P V+S Sbjct: 123 LKHKVPEHAQETMKAG----PIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYS 178 Query: 192 RDQLLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFA 243 RDQL++ + + +R VD ++ LR+ L G I+ V GVGY Sbjct: 179 RDQLIDRVWGRHIAIDERTVDVNVLRLRKVLG---EGRYLIKTVRGVGYMLT 227 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 127 bits (318), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 4/212 (1%) Query: 34 YLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEICRQLRSFSD-VPVLML 92 YL+ G+ A + +R DL++LD+MLPG DG ICR+LR D P++ML Sbjct: 38 YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 97 Query: 93 TARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALVQR-AVQTQQPRR-TD 150 TA+ E+ DR+ GLE+GADDYI K PF+PRE+VAR+ ++LRR + ++ P+ T Sbjct: 98 TAKGEDVDRIVGLEMGADDYIAK-PFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTF 156 Query: 151 WPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRDQLLNHLHDDDRFVTDRV 210 +D + E + LT E +LK FA Q SR++L+ + V DR Sbjct: 157 GEFTLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRS 216 Query: 211 VDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSF 242 +D I LR+ +EP IQ V+G+GY F Sbjct: 217 LDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 248 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 123 bits (309), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 20 IVEDEPKLAELLQKYLALAGYTARHVARGDAALE----AVRTQRPDLILLDIMLPGMDGW 75 ++ED+ +LA ++ YL G+ +H A L+ A + ++LLD+MLP DG Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 76 EICRQLRSF----SDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSML 131 ++CRQ+R+F + +P++MLTA+ + DR+ GLELGADDYI K PF PRE++AR++++L Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPK-PFEPRELLARLRAVL 119 Query: 132 RRNALVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFS 191 RR A R + +D + + +P+ T + LL A G+V S Sbjct: 120 RRQHTTP-ATDGHVLRFGRLEIDLDARMIRLDDQDKPV--TSYQFNLLAAMAERAGRVLS 176 Query: 192 RDQLLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFA 243 R+QL++ + + DR +D HI LR +E I V G GY FA Sbjct: 177 REQLMDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFA 228 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 123 bits (309), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 124/232 (53%), Gaps = 14/232 (6%) Query: 18 ILIVEDEPKLAELLQKYLALAGYTARHVARGDAALEAVRTQRPDLILLDIMLPGMDGWEI 77 +LIVEDE K E LQ+ L AG+ + G T DLI+LD+MLP +DGW+I Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWKI 62 Query: 78 CRQLRSF-SDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA- 135 + LR+ ++VP L LTAR DR++GLELGADDY+ K PF+ E++ARV+++LRR Sbjct: 63 LQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVK-PFAFSELLARVRTLLRRGIP 121 Query: 136 --LVQRAVQTQQPRRTDWPLHIDEASHQASVRGEPLNLTPLELRLLKTFAAAPGQVFSRD 193 LV R + L +D A A+ G+ L LT E LL+ G+V R Sbjct: 122 SPLVDRMQVSD--------LVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRS 173 Query: 194 QLLNHLHDDDRFVTDRVVDTHIKNLRRKLEPFFPGHNAIQAVYGVGYSFALP 245 + + + D + V+D I+ LR K++ + I + GVGY P Sbjct: 174 LIASQIWDINFNSDTNVIDVAIRRLRSKMDDDYE-PKLISTIRGVGYVLEDP 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 382,371 Number of extensions: 11789 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 26 Length of query: 247 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 168 Effective length of database: 740,042 Effective search space: 124327056 Effective search space used: 124327056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)