BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4480.p (484 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 110 2e-25 gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 106 3e-24 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 105 5e-24 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 102 3e-23 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 101 9e-23 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 14/237 (5%) Query: 245 QLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEAL--EDGVLQPDAQTL-RSLKSEV 301 Q A+ +E+LR ++ +SH+LRTPL L G E+L L Q L ++L E Sbjct: 673 QDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEA 732 Query: 302 EHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMS----LTTAL 357 ++ LV +L D++ +G + + +L L + A R +Q ++ T Sbjct: 733 RRMSNLVSNLLDMARIQSGEVKF-----NLQWLQFEEVVGSALRASQSAIAHHEIKTRLA 787 Query: 358 PAAMLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEV 417 P LV D ++++ NL EN+ +YT G R+ + A++ + + D+ PG+P Sbjct: 788 PDLPLVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQ 847 Query: 418 MARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVILP 474 +F++F R E R A+ G GLGLAICR I++AHQGTI A+ SP GG ++ LP Sbjct: 848 EEAIFDKFTRGE--RESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 143/278 (51%), Gaps = 18/278 (6%) Query: 201 ISGVLTRPLTRVARATHRLAGGDYAIRVEVESGDEVGMLAQDFNQLAMTLERNEKLRREF 260 ISG++ +PL R+ AT +A G + + E+ FNQ+ L R E R Sbjct: 179 ISGLINQPLARLTAATRAIANGQWPAPLPESGPTEIREANHSFNQMVDDLNRVESDRAVV 238 Query: 261 MADVSHELRTPLGILNGQLEALEDGVLQPDAQTLRSLKSEVEHLNKLVGDLYDLSLADAG 320 +A +SH+LRTPL + QLE +E L DA+ + ++S++E ++ ++G D A Sbjct: 239 LAGISHDLRTPLARM--QLE-VEMAGLPDDAR--KGMQSDLEQMDAIIGQFLDY----AK 289 Query: 321 ALTYRH-ADIDLTPLLQDSAATYAERFNQRGMSLTTALPAAMLVHADGARLQQLFNNLFE 379 + H +DLT LL + AA A R + + + + V + ++++ NNL E Sbjct: 290 PVDSSHFKSVDLTALLSE-AAHEAARLPD--VQVHPFMEDKVTVLGNAIDIKRVVNNLVE 346 Query: 380 NSLRY---TDTGG-RLQVHAQLQQQQWHLFFDDSEPGVPPEVMARLFERFFRVETSRNRA 435 N+ RY TD + + +++ + L D GVP E +ARL F R++++R +A Sbjct: 347 NARRYGKATDAHHVDIDICCRIEGDKVMLEIADHGAGVPAEEIARLLRPFTRMDSARGQA 406 Query: 436 SGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSVIL 473 + GAGLGLAI RI+ H G + + GGL V ++L Sbjct: 407 N-GAGLGLAIVDRIVKRHGGKLHLFNRDGGGLTVQIVL 443 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 155/307 (50%), Gaps = 16/307 (5%) Query: 175 FQQSQFLAQLIIALVAVMLAAFLVVRISGVLTRPLTRVARATHRLAGGDYAIRVE-VESG 233 F++ + A LI+AL+A+++A F V RP+ +V+R + +R+ + Sbjct: 174 FKRILWWATLIVALIALVVAWFAV----QWGHRPIRKVSREIRAIRSSQLDVRLSPTDVP 229 Query: 234 DEVGMLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPDA-- 291 E+ LA FN + +E F AD++HELRTP+ L+ Q + V D Sbjct: 230 IELAELAVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYR 289 Query: 292 QTLRSLKSEVEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQ---DSAATYAERFNQ 348 + L S E + L+ ++GD+ L+ + R + D+T L+Q D AE N Sbjct: 290 EVLYSNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDAN- 348 Query: 349 RGMSLTTALPAAMLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDD 408 ++LT + ++ AD + + +NL N++RY+ G + V ++ + ++ Sbjct: 349 --ITLTLSGQVKPII-ADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVEN 405 Query: 409 SEPGVPPEVMARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLR 468 + + + +LF+RFFRV+ SR R S GAGLGLAI + II+AH G + A+ S G ++ Sbjct: 406 PGEQIAEDDLPKLFDRFFRVDPSRQRKS-GAGLGLAIVKSIIEAHDGKVQAT-SRNGLIK 463 Query: 469 VSVILPA 475 + LP+ Sbjct: 464 FLIELPS 470 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 19/231 (8%) Query: 251 ERNEKLRREFMADVSHELRTPLGILNGQLEALEDGVLQPD---AQTLRSLKSEVEH---L 304 ER E +RR+F+A+ SHELRTPL ++NG LE + QPD A + LK +E + Sbjct: 200 ERIEMMRRDFIANASHELRTPLTVINGFLEIAQ---AQPDLDQAIRMSHLKLMIEQGQRM 256 Query: 305 NKLVGDLYDLSLADAGALTYRHADIDLTPLL----QDSAATYAERFNQRGMSLTTALPAA 360 LV D+ L+ ++ R +++ LL Q++ A R +SLT P Sbjct: 257 QNLVEDMLTLTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGGRHE---ISLTIDGPD- 312 Query: 361 MLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSEPGVPPEVMAR 420 + L+ F+NL N++RYT GR+ + Q D+ G+ PE + R Sbjct: 313 --IEGSADELRSAFSNLVSNAVRYTPIHGRIDIKWQNTAAGPQFSVKDTGIGMRPEHLVR 370 Query: 421 LFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASDSPLGGLRVSV 471 L ERF+RV+ SR+R + G GLGLAI + ++ H + P G SV Sbjct: 371 LTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLAIESQPDVGSTFSV 421 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 101 bits (251), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 10/231 (4%) Query: 235 EVGMLAQDFNQLAMTLERNEKLRREFMADVSHELRTPLGILNGQLE-ALEDGVLQPDAQT 293 EV L N L ++ + F+AD +H+LRTP+ L +E AL + L + Sbjct: 204 EVEPLVGAVNDLMTRVDAVLGFQGRFIADTAHQLRTPVAGLKAHIELALRENDLTQVKRA 263 Query: 294 LRSLKSEVEHLNKLVGDLYDLSLADAGALTYRHADIDLTPLLQDSAATYAERFNQRGMSL 353 L L + E L++LV L L+ + + A DL L +A + ++ + L Sbjct: 264 LGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDL 323 Query: 354 ---TTALPAAMLVHADGARLQQLFNNLFENSLRYTDTGGRLQVHAQLQQQQWHLFFDDSE 410 T P +L++ + AR+ ++ NNL +N++RYT GGR+ VH + Q + HL D Sbjct: 324 GFDTAGQP--VLLNGEAARVTEMINNLVDNAIRYTPPGGRVTVHVR-QDEHAHLIVSDDG 380 Query: 411 PGVPPEVMARLFERFFRVETSRNRASGGAGLGLAICRRIIDAHQGTIGASD 461 +P E R+FERF R+ S G+GLGLAI I H TI D Sbjct: 381 ARIPVEERTRIFERFHRLLGSHEE---GSGLGLAIVHEIATLHNATITLED 428 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 867,608 Number of extensions: 34590 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 21 Length of query: 484 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 399 Effective length of database: 720,272 Effective search space: 287388528 Effective search space used: 287388528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)