BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4479.p (430 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 347 6e-97 gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 308 3e-85 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 100 1e-22 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 347 bits (890), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 187/360 (51%), Positives = 262/360 (72%), Gaps = 3/360 (0%) Query: 21 LALSLTMVAVLGACSRSGDQPKSAAQSEVGYVVVKAQRQALTTELPGRTTAYLAADIRPQ 80 A+ L VA+ G C + + V V +KAQ +LT ELPGRT A+L A++RPQ Sbjct: 13 FAVMLAAVAISG-CGNKEAAAPAPSAPAVTVVTLKAQEVSLTRELPGRTNAFLVAEVRPQ 71 Query: 81 VGGIIQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLLKSEATLASSKLKAERYAE 140 V GII++RLF EG+ VKAGQPLYQ+D A YQA Y SAKA+L +++ATL S++L A R AE Sbjct: 72 VNGIIKKRLFTEGAQVKAGQPLYQLDDAIYQANYASAKAALARAQATLKSAELNATRTAE 131 Query: 141 LNKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIVSPISGRIEQSTVTP 200 L KIDAV++QDN++ ++ + Q++ADV +AA+Q+ ++ L Y +I SPI+GRI +S+VT Sbjct: 132 LVKIDAVSRQDNENAEAALSQSKADVAAAQAALQSNSVTLGYAQITSPITGRIGKSSVTQ 191 Query: 201 GALVTASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRKSGANAAQVKILLED 260 GALVTA+Q AL TVQQ++P+Y+D+TQS+ +LL+LR+ELA+G++ +SG V+I+LED Sbjct: 192 GALVTANQAAALATVQQLNPVYIDLTQSSSELLQLRKELAAGRLTQSG--NLPVQIVLED 249 Query: 261 GSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDEHALLVPQ 320 GS Y H GKL F ++VD GTG LR VPNPD +L+PG YVRA++ GV ++A+LVPQ Sbjct: 250 GSRYQHDGKLAFADVTVDPGTGSFALRVTVPNPDNILMPGMYVRALIGNGVRQNAILVPQ 309 Query: 321 KAISRDQTGAATALVVGTDGKVQQRVVTVARAVGNNWWISKGLQEGDKLIVDGLQKVRVG 380 + I+RD G +A+VV DGKV R V+V+R +G+ W + GL GD++IV GLQK++ G Sbjct: 310 QGIARDPKGNTSAMVVDKDGKVALRPVSVSRTIGDKWLVEDGLAAGDRVIVAGLQKIKPG 369 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 308 bits (789), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 165/356 (46%), Positives = 242/356 (67%), Gaps = 2/356 (0%) Query: 25 LTMVAVLGACSRSGDQPKSAAQSEVGYVVVKAQRQALTTELPGRTTAYLAADIRPQVGGI 84 + AV G C +S + +EV V +K+ +T ELPGR + A+IR +V G+ Sbjct: 15 FILFAVAG-CGKSDAPAAAPPPTEVSVVTIKSSALGVTNELPGRLESTRIAEIRARVPGV 73 Query: 85 IQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLLKSEATLASSKLKAERYAELNKI 144 + +R F+EGS VKAG L+ IDPA ++A Y+SA A++ ++EATL ++LK +RY L Sbjct: 74 VLKRTFREGSDVKAGATLFLIDPAQFKATYNSANAAVARAEATLLQAELKEKRYKPLVAT 133 Query: 145 DAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIVSPISGRIEQSTVTPGALV 204 +A++KQ+ DD +T++Q +AD+ KAA +TA ++L Y + SPISGRI ++ VT GALV Sbjct: 134 NAISKQEYDDVTATLKQAEADLAASKAARETARLSLDYATVTSPISGRIGRALVTEGALV 193 Query: 205 TASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRKSGANAAQVKILLEDGSTY 264 ++ T L TVQQIDPIYV++TQS+ ++L+L+R LA G+++ +G +V ++ EDG Y Sbjct: 194 GQNEATPLATVQQIDPIYVNMTQSSTEILQLQRALADGKLKSAGKGQVKVTLVTEDGQEY 253 Query: 265 DHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDEHALLVPQKAIS 324 PGKL F+ L+VD +G ITLRA PNPD LLPG YVRA +E+ ++E+A+ VPQ+AIS Sbjct: 254 AQPGKLLFSDLTVDASSGAITLRAEFPNPDSQLLPGMYVRARVEQAINENAITVPQQAIS 313 Query: 325 RDQTGAATALVVGTDGKVQQRVVTVARAVGNNWWISKGLQEGDKLIVDGLQKVRVG 380 R GAA +VV + V R VT A G++W IS GL++GD++IV+GLQK++ G Sbjct: 314 RTPDGAAV-MVVSAENTVVSRPVTTGAASGDSWVISDGLKDGDQVIVEGLQKIKPG 368 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 150/317 (47%), Gaps = 19/317 (5%) Query: 67 GRTTAYLAADIRPQVGGIIQQRLFKEGSLVKAGQPLYQIDPASYQAAYDSAKASLLKSEA 126 G TA D+RP+V I++ +EG VKAGQ L+ +D S Q+ A+A L ++ Sbjct: 59 GYVTAINTVDVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELAAGQS 118 Query: 127 TLASSKLKAERYAELNKIDAVAKQDNDDTQSTMRQNQADVEVQKAAVQTAAINLQYTRIV 186 LA ++L +R +L + V++ D ++ + + + +A +++ I L RI Sbjct: 119 DLADAELALKRNEDLLSRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSDNRIA 178 Query: 187 SPISGRIEQSTVTPGALVTASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRK 246 + ISGRI +V PG+L S + T+ Q+DPI V T RELA+ Sbjct: 179 ASISGRIGIISVHPGSLAQPS-GDPMVTISQLDPIAVSFTLP-------ERELANITATY 230 Query: 247 SGANAAQVKILLEDGSTYDHPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAV 306 NA L + GKL F + DT +G I ++A N L PG++V Sbjct: 231 PQGNAPVTARL---PGQPEMTGKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVS 287 Query: 307 LEEGVDEHALLVPQKAISRDQTGAATAL--VVGTDGKV-QQRVVTVARAVGNNWWISKGL 363 L HA+LVP +A+ TG VV D V +Q+V VA G I GL Sbjct: 288 LVSRNVSHAVLVPAQAVV---TGPIDKFIYVVQPDATVKEQKVDVVAIEEGQAAVI--GL 342 Query: 364 QEGDKLIVDGLQKVRVG 380 G +++V+G Q +R G Sbjct: 343 DAGARVVVEGTQNLRPG 359 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 683,727 Number of extensions: 26625 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 9 Length of query: 430 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 346 Effective length of database: 723,567 Effective search space: 250354182 Effective search space used: 250354182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)