BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4477.p (493 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 451 e-128 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 372 e-104 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 341 5e-95 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 149 3e-37 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 131 6e-32 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 451 bits (1161), Expect = e-128, Method: Compositional matrix adjust. Identities = 245/485 (50%), Positives = 324/485 (66%), Gaps = 17/485 (3%) Query: 8 KPTLWPRTAMILALTAALAGCANLEPDYARPVAPVPASW----TQQIDGKTVVSATGKVG 63 KP L + + LA+T A++GCA LEP + A +PA+W G+ V + T Sbjct: 3 KPLL---STLALAITLAVSGCAMLEPQLPKADAAIPAAWPLPPNTAAAGQNVTADTSATK 59 Query: 64 QSDADQLGWRQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISAT 123 + A +GWR FF+DP+L+++IA AL NNRDLRVAVLN+E+ARAQY+I +A+R+P++ Sbjct: 60 EQAAADIGWRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALD-- 117 Query: 124 GSSSASRTPAELSSTGLATVSHQQSLTVGMSA-YELDFFGRLKNLSDAALETYQYQVETR 182 GS + +R+ + + G + +SA +ELD FGR+ NLS AALE Y Q E + Sbjct: 118 GSVARNRSGGNVVNPG-------DYYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQ 170 Query: 183 RSTHISLVAEVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLE 242 RS +SL+AE+A +LT A+D + ++AQ T+ +Q Y+L + H G VSG+DL+ + Sbjct: 171 RSAQLSLIAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQ 230 Query: 243 ATVEAARADVASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVL 302 T+E ARADVA Y VA D NAL LLVGA V+ +LLP G S + PA LPSQVL Sbjct: 231 TTIETARADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPLPAQLPSQVL 290 Query: 303 LRRPDVLAAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPS 362 LRRPDV EH L+ ANA+IGAARAAFFPSI+LT G+AS L GLF G+ WSF P Sbjct: 291 LRRPDVRQTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQ 350 Query: 363 INLPIFNSGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKA 422 I+LPIF+ G+LRA+L A RDI +A YEKAIQ+ F EVADALA+ +TL QR AQ Sbjct: 351 ISLPIFHGGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQAL 410 Query: 423 TAASEKAFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGG 482 A+ +A+ LS+ARY+ G DS+L L AQRT Y+AQQ+L++ +L EQ NR+TLYKVLGGG Sbjct: 411 LDAASRAYDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGG 470 Query: 483 WNEQT 487 W E T Sbjct: 471 WEEGT 475 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/466 (44%), Positives = 298/466 (63%), Gaps = 11/466 (2%) Query: 21 LTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQFFLDPR 80 L A++ ++ P Y RP APV A ++ Q A + GWR FF D R Sbjct: 10 LAASVLSACSMAPKYTRPDAPVAAD--------YPAASAAADKQQRAHETGWRNFFPDQR 61 Query: 81 LQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAELSSTGL 140 LQ +I AAL NNRDLRVA L IE+ARAQY I AD P+++ T + S +RTPA +S TG+ Sbjct: 62 LQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGI 121 Query: 141 ATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISLVAEVATAWLTL 200 +VS + + ++++ELDFFGR+ +L+DAAL +Y E +R+ HISLVAEVA A+L Sbjct: 122 DSVSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAE 181 Query: 201 ASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARADVASYTSQVA 260 + + L LAQ T S+ Y+L ++ ++G S +DL EA +++AR + Q A Sbjct: 182 RAFAEQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRA 241 Query: 261 QDINALRLLVGADVDAALLPTGLPDTA-SVLPATPAGLPSQVLLRRPDVLAAEHTLKSAN 319 Q +NAL LLVG + P P +A +++ PAGLPS +L +RPD+ +AE +L +AN Sbjct: 242 QALNALTLLVGQPLTG--FPEAQPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAAN 299 Query: 320 ADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSGSLRASLDS 379 A+IGAARAAFFP I+LTA GTAS TL LF G+ +W+FAP + LPIF++G A+L Sbjct: 300 ANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFAPQLVLPIFDAGRNSANLTL 359 Query: 380 AKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFRLSEARYKN 439 +++ ++I +ANYEK+IQ+AF EV+DAL R L++++DAQ + A + +L++ R++N Sbjct: 360 SEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQN 419 Query: 440 GIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWNE 485 GI S L L AQR L+SA+Q L+ RL +N I LY+ LGGG E Sbjct: 420 GIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYRSLGGGLTE 465 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 341 bits (875), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 193/414 (46%), Positives = 270/414 (65%), Gaps = 3/414 (0%) Query: 70 LGWRQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSAS 129 +GWR +F D RLQ +IA ALENNRDLR AVL +E+ARA Y I A+++P+I+A S + Sbjct: 64 MGWRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERA 123 Query: 130 RTPAELSSTGLATVSHQQSLTVGMSAYELDFFGRLKNLSDAALETYQYQVETRRSTHISL 189 PA+LS TG +S Q +++G++++E+DF+GR+++L DAALE Y E RR+ ISL Sbjct: 124 HVPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVTISL 183 Query: 190 VAEVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAAR 249 VA+VA ++L L + + LA+ T S+ + + R ++G+ S ++L ++ + A+ Sbjct: 184 VAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLSQAQ 243 Query: 250 ADVASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVL 309 A A A NAL LLVG ++ + L + +LP P GLPS +L+RRPD++ Sbjct: 244 ALGAQLEQARALQANALILLVGVTLELPATSSRLDERQMLLPLQP-GLPSDLLIRRPDIV 302 Query: 310 AAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFN 369 AAEH LK+A+A IGAARAAFFP I LT GTAS L GLF GS +W+FAPSI+LP+F+ Sbjct: 303 AAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAWTFAPSISLPLFD 362 Query: 370 SGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQR-LDAQGKATAASEK 428 +G +L A+ RD+ VANYEK IQ AF +VADALA R L Q+ L AQ T +E+ Sbjct: 363 AGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQLLIAQAALTTQTER 422 Query: 429 AFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGG 482 A RLS+ RY NG +YL L AQR L A+Q L+ +R S++++LY LGGG Sbjct: 423 A-RLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLYAALGGG 475 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 141/474 (29%), Positives = 234/474 (49%), Gaps = 25/474 (5%) Query: 16 AMILALTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDADQLGWRQF 75 A+ +A+ A++GCA+ D ++P +PA+W + V+ G Q D W + Sbjct: 13 ALAVAVLFAVSGCAH-NIDASKPNVEIPATWAE-------VAPAGIELQRD-----WWRG 59 Query: 76 FLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASRTPAEL 135 F L +I +L + DL +A + +A A +P ++ + + + Sbjct: 60 FGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTGQVKPGP 119 Query: 136 SSTGLATVSHQQSLTVGMSA-YELDFFGRLKNLS---DAALETYQYQVETRRSTHISLVA 191 + +G A +S V +S YE+D +GR+ + +A+L +Y +ET R ++L Sbjct: 120 TGSGWA---RSESTGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVR---LTLTT 173 Query: 192 EVATAWLTLASDRDLLKLAQDTYTSQSRTYELTQRSHDIGTVSGVDLASLEATVEAARAD 251 VA A+ + R L++AQ+ + + + + + G S +D++ +TV A RA Sbjct: 174 GVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRAT 233 Query: 252 VASYTSQVAQDINALRLLVGADVDAALLPTGLPDTASVLPATPAGLPSQVLLRRPDVLAA 311 + Q Q ++AL +L+G A + DT ++ +P GLPS ++ RRPDV + Sbjct: 234 ILPLQVQERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSP-GLPSTLITRRPDVASV 292 Query: 312 EHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWSFAPSINLPIFNSG 371 E L + +A++ AARAA P+I+LT G AS L L P S A SI +F+ Sbjct: 293 EAQLLAGSANVAAARAALLPTISLTGSAGNASAALLTLGNPAY-SIGIAASIVQTLFDGN 351 Query: 372 SLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDAQGKATAASEKAFR 431 SLR +++ + TR +Y + + TA EV DAL ++ AQ +E+A Sbjct: 352 SLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAERALA 411 Query: 432 LSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWNE 485 LSE RY+ G D + L AQRTL++A L LRL + ++K LGGGW++ Sbjct: 412 LSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGWSK 465 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 131 bits (330), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 126/485 (25%), Positives = 206/485 (42%), Gaps = 28/485 (5%) Query: 14 RTAMILALTAALAGCANLEPDYARPVAPVPASWTQQIDGKTVVSATGKVGQSDAD---QL 70 R +++ L ++ C + PDY R P ++T++ T G + D Sbjct: 9 RYLIVVTLIQLISAC-TVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISA 67 Query: 71 GWRQFFLDPRLQQVIAAALENNRDLRVAVLNIEKARAQYRITDADRYPSISATGSSSASR 130 W F L + + +L NN L+ A ++++++ + +P I GS SA+R Sbjct: 68 DWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIG--GSFSATR 125 Query: 131 T-PAELSSTGLATVSHQQSLTVGMS-AYELDFFGRLKNLSDAALETYQYQVETRRSTHIS 188 P+ + V T+G + +Y LD FG + + +A YQ +T+++ Sbjct: 126 QLPSAFRFGSASPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQKYVALATYLT 185 Query: 189 LVAEVATAWLTLASDRDLLKLAQDTYTSQSRTYEL--TQRSHDIGTVSGVDLASLEATV- 245 L V + A+ + Q Q + Q +H I + V Sbjct: 186 LSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLLASS 245 Query: 246 EAARADVASYTSQVAQDINALRLLVGA-------DVDAALLPTGLPDTASVLPATPAGLP 298 +AA A VA Q + L+ + D+ LP LP T LP Sbjct: 246 QAALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLELPQDLPLT----------LP 295 Query: 299 SQVLLRRPDVLAAEHTLKSANADIGAARAAFFPSITLTADGGTASRTLGGLFKPGSGSWS 358 S+++ +RPDVLAAE L A+A +G A AA FPS +L A+ + LG L S WS Sbjct: 296 SELVRQRPDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWS 355 Query: 359 FAPSINLPIFNSGSLRASLDSAKITRDIDVANYEKAIQTAFSEVADALAVRATLDQRLDA 418 +++PIF G+ +A+ +ANY + + +AF +VAD L Q + A Sbjct: 356 VGSGVDVPIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADVLTAIEHDAQAVKA 415 Query: 419 QGKATAASEKAFRLSEARYKNGIDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKV 478 Q ++ A+E+ +L E Y+ G+ SYL L A Y ++ + + L+ Sbjct: 416 QAESLGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVA 475 Query: 479 LGGGW 483 LGGGW Sbjct: 476 LGGGW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 807,474 Number of extensions: 29993 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 7 Length of query: 493 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 408 Effective length of database: 720,272 Effective search space: 293870976 Effective search space used: 293870976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)