BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4470.p
         (244 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096485|ref|YP_001101560.1| putative regulator protein [Her...   135   2e-33
gi|134094985|ref|YP_001100060.1| GntR family transcriptional reg...   127   5e-31
gi|134096476|ref|YP_001101551.1| putative regulator protein [Her...   120   6e-29

>gi|134096485|ref|YP_001101560.1| putative regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  135 bits (341), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 121/231 (52%)

Query: 13  LYLQLRDQLAAQIRAQKWQPGQAIPSEAELSQTFQVAVGTVRRAIETLMSEGLVERTHGR 72
           LY +++ Q+   + A +W+PG+AIP+E +L + F V++GT+R+AI+ L++E ++ R  GR
Sbjct: 16  LYKEVQKQVLRALAAGEWKPGEAIPAEKKLCERFSVSIGTLRKAIDELVAENILIRHQGR 75

Query: 73  GTFVRRARFDNSLFRFFRFEAADGRPLAPKSVIVSRKIIEAPRQVAEALHLKPHGKVIEL 132
           GT+V +      +FRFF      G    P+  +V      A +  AE L L   GKV   
Sbjct: 76  GTYVAQHNRAQQMFRFFNVTDHSGNKTYPQLSLVEFAKRRADKHAAEKLLLPATGKVFAF 135

Query: 133 LRLRTVDGQPVLAENIYLCAQRFKALADKAPEQFGDLLYPLYERECGLIVASARETLTVE 192
             L  +  QPV+ ++I L    F +L +       + LY LY+ + GL V    E L   
Sbjct: 136 TNLLYLQEQPVIVDDIVLPEPLFVSLTEAQIRNRPNTLYNLYQIDFGLSVIRTEERLRAA 195

Query: 193 TVTAAQARLLGLKEKTPVVVIERIAFGSDGQPLEWRQSRGAGSKFRYSAEI 243
            V    A LLGLK  TP++ + R+AF  +  P+EWR S     K  Y A I
Sbjct: 196 PVGEKHAALLGLKLGTPILEVRRVAFSYNDLPIEWRISYINTEKHEYVAPI 246


>gi|134094985|ref|YP_001100060.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 312

 Score =  127 bits (319), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 123/232 (53%)

Query: 12  PLYLQLRDQLAAQIRAQKWQPGQAIPSEAELSQTFQVAVGTVRRAIETLMSEGLVERTHG 71
           PLY Q++  +   +++ +W+PG+ IPSE EL+  F+V+ GTVR+AI+ L +E LV R  G
Sbjct: 80  PLYQQIKALITKSLQSGEWRPGELIPSEIELANRFKVSQGTVRKAIDELSAENLVVRRQG 139

Query: 72  RGTFVRRARFDNSLFRFFRFEAADGRPLAPKSVIVSRKIIEAPRQVAEALHLKPHGKVIE 131
           +GTFV       + FRF R +   G    P++ +   + + AP  +A  L +K    V  
Sbjct: 140 KGTFVATHHEARAQFRFLRLKPDVGDAQYPENTVTEARRLRAPADIARQLDIKTGDSVFF 199

Query: 132 LLRLRTVDGQPVLAENIYLCAQRFKALADKAPEQFGDLLYPLYERECGLIVASARETLTV 191
           + R+++ DG P + E ++L    FK L+ +   Q+   +Y L E E G+ +  A E +  
Sbjct: 200 VKRIQSFDGAPTILEELWLPGSIFKGLSLERVLQYKGPMYALLETEFGIQMIRAVENIRA 259

Query: 192 ETVTAAQARLLGLKEKTPVVVIERIAFGSDGQPLEWRQSRGAGSKFRYSAEI 243
                + A LL L   TP++ + R++F    + +E R+S    +   Y  E+
Sbjct: 260 VVADQSAAELLMLPLNTPLLSVNRVSFTYGDKAVEVRRSLYVTNNHHYQNEL 311


>gi|134096476|ref|YP_001101551.1| putative regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  120 bits (301), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 1/230 (0%)

Query: 13  LYLQLRDQLAAQIRAQKWQPGQAIPSEAELSQTFQVAVGTVRRAIETLMSEGLVERTHGR 72
           LY +++ ++   + A +W+PG+AIP+E +L + F V++GT+R+AI+ L++E ++ R  GR
Sbjct: 14  LYKEVKRRVLRALAAGEWKPGEAIPAEKKLCELFSVSIGTLRKAIDELVAENILIRHQGR 73

Query: 73  GTFVRRARFDNSLFRFFRFEAADGRPLAPKSVIVSRKIIEAPRQVAEALHLKPHGKVIEL 132
           GTFV     +  +FRFF     DG    P   +++    +A     + L  +P  KV E 
Sbjct: 74  GTFVSMHNREQQMFRFFNVANHDGTKSYPHLELIAFAKKKAGTLAVQKLR-QPGSKVYEF 132

Query: 133 LRLRTVDGQPVLAENIYLCAQRFKALADKAPEQFGDLLYPLYERECGLIVASARETLTVE 192
             + ++ G PV+ ++I +    F  L +       + LY LY+   G+ +    E L   
Sbjct: 133 TNVLSLQGAPVIVDDITVPDLLFVGLTEAVLRNRPNTLYSLYQVRFGISIIRIEERLRAV 192

Query: 193 TVTAAQARLLGLKEKTPVVVIERIAFGSDGQPLEWRQSRGAGSKFRYSAE 242
           +  A  A LL L    P++ + R+A+  D QP+EWR S        Y A+
Sbjct: 193 SADARYADLLHLAIGAPLLEVRRVAYSYDDQPVEWRISHINTEHHEYMAQ 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 449,277
Number of extensions: 17161
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 165
Effective length of database: 740,042
Effective search space: 122106930
Effective search space used: 122106930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)