BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4467.p (512 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 360 e-100 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 348 4e-97 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 331 4e-92 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/526 (45%), Positives = 336/526 (63%), Gaps = 35/526 (6%) Query: 4 KIATKLLLSF---ITVLGLMSALGLFSLYQMDKVN---DAAT---EIAHKWEPSIRISLM 54 KI +L ++F + ++ M+ +G+ L + K + AT +A +W I + + Sbjct: 7 KIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKGIETNTV 66 Query: 55 LERTLVRVRSTEFQHILGNEQTMATLEKALAERYAEFTTL--QQDYRKLDLTKEE----- 107 RT RVR+++ + +Q M+ + A++++ E TL + +KL T E Sbjct: 67 --RTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKRATY 124 Query: 108 SAAFDQLSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAY-RAIEKQFSALRQAN 166 +A D + N A E + IA + D AY +++E A+ A Sbjct: 125 TAIRDDVMNLREARGAELQNAIANKMKPAAD------------AYIQSVE----AVVNAQ 168 Query: 167 IDHKEEANTAADRVFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVAD 226 I++ E+A D ++ ++ ++ L + + LG+ LA + R +++PL A+ +AR VA Sbjct: 169 INNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVAS 228 Query: 227 NDLSGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSAR 286 DL+G++ V S+DETGQL+ AL M SL + +V + I TAS +IA GN DLS+R Sbjct: 229 GDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSR 288 Query: 287 TESQASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEI 346 TE QASSLEETAS+MEELTSTV+QNA++A QAN+L T++ +A++GG VV +VV TM I Sbjct: 289 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGI 348 Query: 347 RSGSARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 406 + + +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAA Sbjct: 349 NTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 408 Query: 407 REIKELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEIN 466 +EIK LI+ SV +V +G+ LV +AG TM E+VDSV RV +M+EI AS+EQS GI+++N Sbjct: 409 KEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVN 468 Query: 467 HAVTQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRLRSV 512 A+ QMD+ TQQNAALVE+AAAAA SL +Q LA V+ F+L V Sbjct: 469 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGV 514 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 352 bits (902), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 207/340 (60%), Positives = 261/340 (76%), Gaps = 7/340 (2%) Query: 177 ADRVFDHSQ-HWIM------GLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDL 229 A + F+ SQ ++M G ++ G+LL +A + R+++RPL +A+Q+AR VA DL Sbjct: 173 AKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDL 232 Query: 230 SGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTES 289 + Q++V+S +ETGQL+ AL M SL + V V R I ASGEIA GNADLS+RTE+ Sbjct: 233 TQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEA 292 Query: 290 QASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSG 349 QA SLEETAS+MEELTSTVRQNA++A QAN+LV ++T +A +GG+VV VV TMG I+ Sbjct: 293 QAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDS 352 Query: 350 SARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREI 409 S +I DIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA+EI Sbjct: 353 SRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEI 412 Query: 410 KELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAV 469 K LI+ SV +V +G+ LVDQAG TM EIV SV VA +MSEI AS+EQS GI+++N A+ Sbjct: 413 KALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAI 472 Query: 470 TQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRL 509 +QMDE TQQNAALVEQAAAAA S++DQ +L+ VA F+L Sbjct: 473 SQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKL 512 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 348 bits (892), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 237/523 (45%), Positives = 325/523 (62%), Gaps = 25/523 (4%) Query: 4 KIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEIAHKWEPSIRISLMLE------- 56 KI +L L+F VL LM+++ + ++++ +V A + E R+S+ Sbjct: 7 KIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQE-RLSIQWHAGNSANA 65 Query: 57 -RTLVRVRST--EFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQ 113 RT R+RST E Q NE T ++E T LQ L ++E Sbjct: 66 IRTTARIRSTNQEVQQQFQNEMTAQSVE---------ITKLQNKLESLIHSEEGKKLMSA 116 Query: 114 LSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKE-- 171 + + Y+ +++ L + K + K A+E +S Q +D ++ Sbjct: 117 VGDKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALET-YSKTVQDVVDFQQVT 175 Query: 172 --EANTAADRVFDHSQHWIMGLLVAGILLGLALAIAIARVVSRPLAEALQLARRVADNDL 229 EA T D ++ + +++ L + L LA ++R ++RPL A+++AR VA DL Sbjct: 176 FLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDL 235 Query: 230 SGQVNVHSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTES 289 ++ V+S DETGQL+ AL M L + V EV I I TAS +IA GN DLS+RTE Sbjct: 236 RNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 290 QASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSG 349 QASSLEETAS+MEELTSTV+QNA++A QAN+L +++ +A++GG VV +VV TM +I S Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSS 355 Query: 350 SARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREI 409 + +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAA+EI Sbjct: 356 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 415 Query: 410 KELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAV 469 K LI SV +V G+ LV +AG TM E+V+SV RV +MSEI AS+EQS GI+++N A+ Sbjct: 416 KTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAI 475 Query: 470 TQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRLRSV 512 QMD+ TQQNAALVE+AAAAA SL +Q +LA V+ F+L V Sbjct: 476 GQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGV 518 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 337 bits (863), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 229/522 (43%), Positives = 329/522 (63%), Gaps = 26/522 (4%) Query: 4 KIATKLLLSFITVLGLMSALGLFSLYQMDKVNDAATEI----------AHKWEPSIRISL 53 KI T+L L F +L L++A+G + +++ +N A+ + A W + S+ Sbjct: 7 KIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNW--LLGTSV 64 Query: 54 MLERTLVRVRSTEFQHILGNEQTMATLEKALAERYAEFTTLQQDYRKLDLTKEESAAFDQ 113 RTL V++++ ++ +KA+ + + T +Q+ + +E F + Sbjct: 65 NASRTLALVKASD-------PESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAE 117 Query: 114 LSNTLAAYLVEHRKIIALSHENHKDEALALTKGDSLKAYRAIEKQFSALRQANIDHKEEA 173 ++ +AY+ + I+ + + EA + K A++ +++ ++ E Sbjct: 118 VAKKRSAYIDIRKSILGVKAGGNIAEANQMI---DTKMVPALDAYVDSVKNVLGHYENEV 174 Query: 174 NTAADRVFDHSQHWIMGLLVAG---ILLGLALAIAIARVVSRPLAEALQLARRVADNDLS 230 A + + D M L++ ILLG +A + ++RPL EAL++A VA+ DL+ Sbjct: 175 KLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLT 234 Query: 231 GQVNV-HSRDETGQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTES 289 + ++ ++DE G L+ AL M +L V ++ I TAS EIA GN DLS+RTE Sbjct: 235 ARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQ 294 Query: 290 QASSLEETASAMEELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSG 349 QASSLEETAS+MEELTSTV+QNA+++ QAN+L ++ +A +GGAVV +VV TMG I + Sbjct: 295 QASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNS 354 Query: 350 SARIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREI 409 + +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAA+EI Sbjct: 355 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEI 414 Query: 410 KELIEGSVQQVASGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAV 469 K LI SV++V +G+ LV +AG TM EIVD V RVA +M+EI AS+EQS GI+++N AV Sbjct: 415 KTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAV 474 Query: 470 TQMDEGTQQNAALVEQAAAAAHSLRDQTDQLASLVARFRLRS 511 +QMD+ TQQNAALVE+AAAAA SL+DQ LA V+ FR+ S Sbjct: 475 SQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGS 516 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 331 bits (849), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 193/329 (58%), Positives = 242/329 (73%), Gaps = 4/329 (1%) Query: 186 HWIMGLLVAGILLGLA----LAIAIARVVSRPLAEALQLARRVADNDLSGQVNVHSRDET 241 H+ + V G+LLGL A + R ++ PL E L +A DL+ + V SR+E Sbjct: 187 HYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEM 246 Query: 242 GQLMLALNHMTYSLGEMVGEVHRSIAIINTASGEIAHGNADLSARTESQASSLEETASAM 301 G LML L M L + V +V I+TA+ EIA GN DLS+RTE QA+SLEETAS+M Sbjct: 247 GTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSM 306 Query: 302 EELTSTVRQNAEHAHQANELVSTSTRLAQQGGAVVDRVVQTMGEIRSGSARIADIIGVID 361 EELTSTV+QN ++A QAN+L ++++ +A +GGAVV VV TM I + + +I DIIGVID Sbjct: 307 EELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVID 366 Query: 362 GIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAREIKELIEGSVQQVA 421 GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAA+EIK LI+ SV +V Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVD 426 Query: 422 SGADLVDQAGKTMHEIVDSVARVATLMSEIAVASREQSRGIDEINHAVTQMDEGTQQNAA 481 +G LV +AG TM E+VDSV RV +MSEI AS+EQS GI+++N A+ QMDE TQQNAA Sbjct: 427 AGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAA 486 Query: 482 LVEQAAAAAHSLRDQTDQLASLVARFRLR 510 LVEQAAAAA SLRDQ L+++V+ F+L+ Sbjct: 487 LVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 669,507 Number of extensions: 21861 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 14 Length of query: 512 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 426 Effective length of database: 716,977 Effective search space: 305432202 Effective search space used: 305432202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)