BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4462.p (405 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 411 e-116 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 92 5e-20 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 81 1e-16 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 78 8e-16 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 411 bits (1057), Expect = e-116, Method: Compositional matrix adjust. Identities = 221/395 (55%), Positives = 278/395 (70%), Gaps = 16/395 (4%) Query: 18 LYLCAAL-LGAGAAMPAWAQSAVTLYGTVDLGLAYSSNQGGASNTYMNSGALNASKLGFM 76 + L AAL L G A AQ+ VT+YG D+ + YSSNQGGASNTYM SG L S++GF Sbjct: 7 VVLVAALTLYTGVLQNAGAQNGVTIYGIADVAMVYSSNQGGASNTYMRSGNLAGSRIGFK 66 Query: 77 GSEDLGGGTSALFRLENGFSADTGAMSSGGVLFNRQSYVGLASTQWGQVTVGRQYTPYFQ 136 G+EDLGGGT A+F+LE+GF+ DTG MSS LFNRQ++VG+ +T++G +T GRQYTPY+ Sbjct: 67 GTEDLGGGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYL 126 Query: 137 YVGGLGPTGVLTGATGAHPGDIDALDTTLRMNNSIVYTLPTLGGLQAGIQYGMGEQAGSA 196 +VG +GPT LTGATGAHPGDID LDTT+R NNSI YT P GLQ G GE AG Sbjct: 127 FVGPIGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDM 186 Query: 197 ANGSSVSAALRYDYQAFSWSAGYTRIKN------LASGNSAGNFGNVGSFANNSPINAGY 250 +G ++SAA++YD ++++ GY R+ N + S N++ NF N SP+N GY Sbjct: 187 GSGRTISAAIKYDINNWNFALGYQRLNNSNNPGGVWSPNASANF-------NTSPVNNGY 239 Query: 251 ASADSTQLLATAARYTWGDLMMGLNYSNVQYKPGALSAFTQTATFNTVGLIASYNVNAAL 310 SADS Q LA AARYT G +++G N S V+Y+P S FTQ ATF+T+GL+ Y + Sbjct: 240 LSADSAQYLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKATFDTLGLLTGYQMTPVF 299 Query: 311 TLAAGYSYTAEKARNGISSPAKYNQLSLEQVYALSKRTALYAIQAYQRANGQTLRVGSSG 370 ++ GYSYT EKA NGIS PAKY+QL+LEQ Y+ SKRTA+Y ++AYQ A G TL +G SG Sbjct: 300 FVSVGYSYTKEKAANGISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSG 359 Query: 371 TSIVDAVAVVGDSQNGTPSNGRGQFVAMLGIRHSF 405 V AVAVVGDSQNGTPS+G Q V M+GIRHSF Sbjct: 360 P--VRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 159/344 (46%), Gaps = 36/344 (10%) Query: 20 LCAALLGAGAAMPAWAQSAVTLYGTVDLGLAYSSNQGGASNTYMN---SGALNASKLGFM 76 L A+LGA A A AQS+VT+YG VD+G+ S + G +N +N SG +AS++GF Sbjct: 6 LALAVLGAFAG-AASAQSSVTVYGIVDMGIT-SQDTGAGANDRLNGVTSGNQSASRIGFK 63 Query: 77 GSEDLGGGTSALFRLENGFSADTGAMS--SGGVLFNRQSYVGLASTQWGQVTVGRQYTPY 134 G+EDLG G A F LE +ADTG +S G FNR + VGL S +G V +GRQ + Sbjct: 64 GTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGL-SGNFGAVNLGRQVSAI 122 Query: 135 FQYVGGLGPTGVLTGATGAHPGDIDALDTTL-----RMNNSIVYTLPTLGGLQAGIQYGM 189 + P G G T A P + L R++NSI YT + G + G Y Sbjct: 123 KDAYDAIDPFG--DGGTIA-PISAIFFNAALKGDNGRISNSIKYTSNSYSGFKFGAHYAF 179 Query: 190 GEQAGSAANGSSVSAALRYDYQAFSWSAGYTRIKNLASGNSAGNFGNVGSFANNSPINAG 249 GEQAG S+ L Y + GY + +G A F P+ Sbjct: 180 GEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAG--APGF---------KPVK-- 226 Query: 250 YASADSTQLLATAARYTWGDLMMGLNYSNVQYKPGALSAFTQTATFNTVGLIASYNVNAA 309 S D L A Y +G + Y + + +P A + + + L S V AA Sbjct: 227 -NSKDKMTFL--GATYDFGVAKLHAAYGDSKNQPVAGNVDNK---YRNYMLGVSAKVGAA 280 Query: 310 LTLAAGYSYTAEKARNGISSPAKYNQLS-LEQVYALSKRTALYA 352 ++ A Y+ + G+ + + ++ + + + LSKRT LYA Sbjct: 281 GSIMASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYA 324 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 151/345 (43%), Gaps = 70/345 (20%) Query: 35 AQSAVTLYGTVDLGLAYSSN---QGGASNTYMNSGALNASKLGFMGSEDLGGGTSALFRL 91 A S++++YGT+D G+ + +N GG++ ++G ++LG G E+LGGG + F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 92 ENGFSADTGAM-SSGGVLFNRQSYVGLASTQWGQVTVGRQ----------YTPY-FQYVG 139 E+GF+ TG + + LFNR S +G+A + +G + GRQ Y P+ ++YV Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGS-FGSLDFGRQPSVACKAVYAYEPFQYRYVH 148 Query: 140 GLGPTGV----LTGATGAHPGDIDALDTTLRMNNSIVYTLPTLGGLQAGIQYGMGEQAGS 195 + G L G G +D R +N Y G A +Y MGE GS Sbjct: 149 IIPLAGAVAGNLDGRVSRPFGTVDG----PRFSNGAQY-FGKFGSFTASAEYIMGEVPGS 203 Query: 196 AANGSSVSAALRYDYQAFSWSAGYTRIKNLASGNSAGNFGNVGSFA-------NNSPINA 248 N ++ + L Y+ F+ YTR N+G+ A N + Sbjct: 204 NRNQAAKAVGLVYNDGTFTVGGAYTRQNP-----------NIGTVAASDYREQNQTTFGG 252 Query: 249 GYASADSTQLLATAARYTWGDLMMGLNYSNVQYKPGALSAFTQTATFNTVGLIASYNVNA 308 GY A R T G L +A T A + L A Y+ Sbjct: 253 GYK--------IDALRITGGYLK-------------TTTAITSQA--KNIWLGARYDFTP 289 Query: 309 ALTLAAGYSYTA-EKARNGISSPAKYNQLSLEQVYALSKRTALYA 352 A +L AGY T E A++ I A+ N L + YALS RT+LYA Sbjct: 290 AASLTAGYYRTTLETAQSEI---ARRNLLIVGATYALSPRTSLYA 331 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 161/375 (42%), Gaps = 57/375 (15%) Query: 30 AMPAWAQSAVTLYGTVDLGLAYSSNQGGA-SNTYMNSGALNASKLGFMGSEDLGGGTSAL 88 ++ A AQS+V GTVD N G A S + +NS + S G G+E+LGGG A Sbjct: 23 SLNALAQSSVQFVGTVDAFAGSLKNSGDAGSKSVVNSSGMETSWWGVKGTENLGGGLQAQ 82 Query: 89 FRLENGFSADTGAMS--SGGVLFNRQSYVGLASTQWGQVTVGRQYTPYFQYVGGLGPTG- 145 F L + F DTGA +F+R ++VGL+ + +G+V+VGR P F P G Sbjct: 83 FALSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGS-FGRVSVGRDLAPNFIPTLTFSPFGG 141 Query: 146 ---------VLTGATGAHPGDI----DALDTTLRMNNSIVYTLPTLGGLQAGIQYGMGEQ 192 +G++ G + A DT +N I+Y +P LGG + + GEQ Sbjct: 142 SFAFSPLELHTQTPSGSYRGQVWSPTVAGDTG--WSNEIMYVMPKLGGFTTSLFFQFGEQ 199 Query: 193 AGSAANGSSVSAALRYDYQAFSWSAGYTRIK------NLASGNSAGNFGNVGSFANNSPI 246 AG ++ A Y+ S+ A + +K ++ SG+S V +F +P Sbjct: 200 AGKPGK-NNYGANTMYEQGPLSFGAYFQSVKVNNPLDSVTSGDS-----RVFTF---TPY 250 Query: 247 NAGYASADSTQLLATAARYTWG-----DLMMGLNYSNVQYKPGALSAFTQTATF----NT 297 N + +T LA + TW DL + + Y L + + NT Sbjct: 251 N---QATGATYTLAASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDLKSNT 307 Query: 298 VGLIASYNVNAALTLAAGYSYTAEKARNGIS---------SPAKYNQLSLEQVYALSKRT 348 V L S V L + ++ T KA S S N SL Y LSKRT Sbjct: 308 VQLGTSVPVGKGSVLFS-WARTNVKADGDFSAVLGGAGGKSSIIRNTASLGYDYFLSKRT 366 Query: 349 ALYAIQAYQRANGQT 363 +Y++ +Y + Q+ Sbjct: 367 DVYSVVSYDKLTDQS 381 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.128 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 689,031 Number of extensions: 25897 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 4 Length of query: 405 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 321 Effective length of database: 723,567 Effective search space: 232265007 Effective search space used: 232265007 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)