BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4460.p
         (428 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona...    66   3e-12

>gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas
           arsenicoxydans]
          Length = 450

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 18/284 (6%)

Query: 9   WWIIVLVCLGTITNYLARNSLGVLAPTLKDELGMSTQQYSYVVAAFQVGYTIMQPVCGFV 68
           W +I  + +  I  YL R S+      ++++LG S   Y      F +GY++ +     +
Sbjct: 31  WRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGYSLFEVPSNML 90

Query: 69  VDLIGLRIGFALFGVLWSLAGVLHAGATGWLSLAGFRALMGLTEAAAIPSGMKAVAEWFP 128
           +  IG R       VLW +        T  +     R L+G+ EA   P  +  + +W+P
Sbjct: 91  MQRIGARKTLLRIMVLWGIVATGMMFVTTPMQFYVMRFLLGVFEAGFFPGVIYFLTKWYP 150

Query: 129 DKEKSVAVGWFNSGTSLGAMLAPPLVIF-------LQLRYGWQSAFVVTGVLGFAWAAL- 180
              +   +  F  G  +  +L  P+  +       +    GWQ  F + G+       + 
Sbjct: 151 GSRRGAVLSMFMLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFFIEGLPAILLGLMV 210

Query: 181 WFAFYRSPHDHAALSEQERTTIVSGQQRPVSAERGKRPVK------DVVSSRRFWAIALA 234
           ++     P     L+E+ER  I+    R V  ++   P +        +   R + ++L+
Sbjct: 211 YWILCDEPSQAKWLTERERALII----RNVKVDQANNPPEHGHSMLSALKDSRVYILSLS 266

Query: 235 RFFAEPAWQTFSFWIPLYFVNERHLDLKSIAMFAWLPFLAADLG 278
            F          FW+P    N   +D+  I +++ +PF  + +G
Sbjct: 267 YFTFISGIYAIGFWLPAMLKNAGVIDVFQIGLYSMIPFGISAIG 310


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 871,703
Number of extensions: 37671
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 7
Length of query: 428
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 344
Effective length of database: 723,567
Effective search space: 248907048
Effective search space used: 248907048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)