BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4457.p (607 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094186|ref|YP_001099261.1| two-component system response r... 258 7e-70 gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent tra... 241 9e-65 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 227 1e-60 gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Hermin... 222 3e-59 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 219 3e-58 >gi|134094186|ref|YP_001099261.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 473 Score = 258 bits (659), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 214/366 (58%), Gaps = 28/366 (7%) Query: 264 TRALVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAIN 323 T ++G + A + R++ ++ TVL TGESG GKE AR LH+ R QPFIA+N Sbjct: 96 TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFIALN 155 Query: 324 CAAIPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVL 383 AAIP+ L+E+ELFG ERGA+TGA SR GRFE ADGGTLFLDE+G + Q +LLRVL Sbjct: 156 TAAIPKDLLESELFGHERGAFTGAQASRRGRFEQADGGTLFLDEIGDMPFDLQTRLLRVL 215 Query: 384 QEGEFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRD 443 +G F RVG +P+K NVRV+AAT+++L Q VR+G FR+DL+ RLNV + LP LRERR+ Sbjct: 216 SDGHFYRVGGHQPLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIRLRLPSLRERRE 275 Query: 444 DIPLLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPL 503 DIP+L HFL ++ GV V+ + A+Q L N PGN+R+L+NL ++A G + Sbjct: 276 DIPILTRHFLAQSAKQLGVEVKRMSDGAMQFLTNLELPGNVRQLENLCNWITVMAPGQTV 335 Query: 504 ---DLPHMFISGETLN-------DEVLSLAL---QGETGTLAGRQEDK--PDAGGQQSLL 548 DLPH G+ + + V ++ + + TL G + P+AGG S Sbjct: 336 EAKDLPHELTEGQAFSASGQAGANAVHGISYTTPESDAMTLGGMTQTSSFPNAGGAASAP 395 Query: 549 DLLTQWRSTQQDAALSL-----PDM--------ESTLIAEAIARAEGNLSAAARLLGISR 595 + W + + A SL P++ ESTLI A+ G + AA LGI R Sbjct: 396 LESSSWIALLEMEAASLLAAGKPEVMDALGRQFESTLIKMALKHTHGRKNDAAVRLGIGR 455 Query: 596 AQLAYR 601 + + Sbjct: 456 NTITRK 461 >gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent transcriptional regulator [Herminiimonas arsenicoxydans] Length = 550 Score = 241 bits (614), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 142/336 (42%), Positives = 194/336 (57%), Gaps = 38/336 (11%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 L+ S L +VA ATVL TGESGVGKE R++H+ ++ PF+ INC A Sbjct: 248 LITRSPIMQQITVLAQKVAKVGATVLITGESGVGKEVLTRLIHKESTHDKGPFVKINCGA 307 Query: 327 IPETLIETELFGVERGAYTGAT-QSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQE 385 IP L+E+ELFG E GA+TGA Q + G E+AD GTLFLDE+G L L Q KLL+VLQ+ Sbjct: 308 IPRDLLESELFGYEGGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQD 367 Query: 386 GEFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDI 445 R+GSTRP++V+VRVVAATN DL V +FR DLF+RLNV P+H+PPLRERR+DI Sbjct: 368 RTLTRLGSTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDI 427 Query: 446 PLLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDL 505 L+ HFL ++G R +++++ ALL+Y +PGNIREL+N+VER V+ A Sbjct: 428 LPLIQHFLDELNAQYGFDKR-LSEQSLAALLDYDWPGNIRELRNMVERLVVTA------- 479 Query: 506 PHMFISGETLNDEVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRSTQQDAALSL 565 P I ++L + + LQ + L D + Sbjct: 480 PESLIRSDSLPTPLRPVELQSDLAHL----------------------------DIKVRS 511 Query: 566 PDMESTLIAEAIARAEGNLSAAARLLGISRAQLAYR 601 E ++ EA+ R G+ AAA+ L IS++ + R Sbjct: 512 AHFERKIVQEAVERY-GSTRAAAKHLQISQSTVVRR 546 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 189/332 (56%), Gaps = 45/332 (13%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 LVG S+A + R+A +TVL TGESG GKE AR +H + R F+ +NC A Sbjct: 179 LVGNSTALQPVRETIKRLATVSSTVLITGESGTGKEIAARAMHYLSSRSGNHFVPVNCGA 238 Query: 327 IPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQEG 386 + +IE+ELFG +GA++GA SR G F A GGTLFLDEV L + Q KLLRVL+E Sbjct: 239 VAPDIIESELFGHVKGAFSGAASSREGLFFYAQGGTLFLDEVAELPMAMQVKLLRVLEEK 298 Query: 387 EFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDIP 446 + VG+ R + V+VRV+AATN ++ +AV++GRFRQDL++RLNV +H+PPLRER DDIP Sbjct: 299 KIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQVHMPPLRERADDIP 358 Query: 447 LLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDLP 506 L +F++ + GV + + A++++++PGN+REL+NL+ER +IL ++P Sbjct: 359 ALAAYFVRQLAPQLGVPPQQPDNALLAAMVSHAWPGNVRELRNLIERWLILG-----NIP 413 Query: 507 HMFISGETLNDEVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRSTQQDAALSLP 566 + I +++ + + +SL Sbjct: 414 EIAIGSKSV----------------------------------------AIDNGSDVSLQ 433 Query: 567 DMESTLIAEAIARAEGNLSAAARLLGISRAQL 598 +E I + + A+GN + AAR LG+SR L Sbjct: 434 AIEKQHILKILGAADGNKTEAARRLGLSRKTL 465 >gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Herminiimonas arsenicoxydans] Length = 454 Score = 222 bits (566), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/255 (44%), Positives = 163/255 (63%), Gaps = 4/255 (1%) Query: 264 TRALVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAIN 323 ++ +G S ++ ++ +VL TGESG GKE AR+LH+ + PFIA+N Sbjct: 128 SKPTLGISREIQRLEEMVVKMGEQWTSVLVTGESGSGKEELARLLHRSAQAGNNPFIAVN 187 Query: 324 CAAIPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVL 383 C A+PE ++E ELFG ERGA+TGA +S G FE A+ GT+FLDE+G L+ AQ +LLRVL Sbjct: 188 CGALPEGMMEAELFGYERGAFTGAAKSHRGYFEQANNGTVFLDEIGELAPAAQVRLLRVL 247 Query: 384 QEGEFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRD 443 QE R+GS +P+KVN R++AAT+ D+ + V+ GRFR+DL++R+N+ + +PPLRER D Sbjct: 248 QEHTLTRLGSEKPIKVNFRLIAATHRDVREEVKAGRFREDLYYRINIIQLRVPPLRERLD 307 Query: 444 DIPLLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPL 503 D+ L FL+ + Q H + R ++ I L + GNIREL++ +ER +L HPL Sbjct: 308 DVAWLARLFLEQWNQAHPTSPRMLSEPTITFLCTLPWRGNIRELKHAIERACLLT-AHPL 366 Query: 504 DLP---HMFISGETL 515 P M IS E L Sbjct: 367 LRPDDFEMQISEEKL 381 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/348 (41%), Positives = 195/348 (56%), Gaps = 31/348 (8%) Query: 267 LVGTSSAFNAACHLLNRVAATDATVLFTGESGVGKERFARMLHQIGKRERQPFIAINCAA 326 L+G S A A + R+A + A V +GESG GKE AR +H R +PF+A+NC A Sbjct: 142 LMGQSDAMQALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARNDKPFVAVNCGA 201 Query: 327 IPETLIETELFGVERGAYTGATQSRAGRFELADGGTLFLDEVGTLSLVAQGKLLRVLQEG 386 IPE L+E E FG +GA+TGA R G F+ A+GGTL LDEV L L Q KLLR +QE Sbjct: 202 IPEALMEAEFFGYRKGAFTGAADDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQER 261 Query: 387 EFERVGSTRPVKVNVRVVAATNEDLAQAVRQGRFRQDLFFRLNVFPIHLPPLRERRDDIP 446 +VG+T V+VR+++AT+++L V +G FRQDL++RLNV +HLPPLRER DDI Sbjct: 262 CVRKVGATVEEPVDVRIISATHQNLHDCVGKGTFRQDLYYRLNVIELHLPPLRERLDDIG 321 Query: 447 LLMNHFLKFYGQRHGVAVRGFTQRAIQALLNYSFPGNIRELQNLVERGVILAQGHPLDLP 506 LL L G G + A+ AL +YSFPGN+REL+N++ER + A Sbjct: 322 LLAQAILVRLG---GGEQAALSPAALAALCSYSFPGNVRELENILERALAFA-------- 370 Query: 507 HMFISGETLND---EVLSLALQGETGTLAGRQEDKPDAGGQQSLLDLLTQWRST---QQD 560 ND EV LAL+ + +L P A Q ++ + +T D Sbjct: 371 ---------NDGLIEVADLALKA-SPSLNPAPASTPSAVSQPISSEVEAEALATLVASSD 420 Query: 561 AALSLPD----MESTLIAEAIARAEGNLSAAARLLGISRAQLAYRQQK 604 SLPD +E +I A+A+ N + AA LLGIS QL YR Q+ Sbjct: 421 IPESLPDHLDEVEREIIRRALAKTRFNRTQAAELLGISFRQLRYRMQR 468 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,181,641 Number of extensions: 51761 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 8 Length of query: 607 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 520 Effective length of database: 713,682 Effective search space: 371114640 Effective search space used: 371114640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)