BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4451.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093309|ref|YP_001098384.1| nicotinate phosphoribosyltransf...   620   e-179

>gi|134093309|ref|YP_001098384.1| nicotinate
           phosphoribosyltransferase [Herminiimonas arsenicoxydans]
          Length = 397

 Score =  620 bits (1599), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 297/391 (75%), Positives = 329/391 (84%)

Query: 1   MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNEPQFPLAELQQEVERELDHLC 60
           M P+V +LLE DLYKFTMWQALLHSHP AQ EY FVCRN P +PL+EL+ +VERELDHLC
Sbjct: 1   MPPIVNNLLENDLYKFTMWQALLHSHPEAQTEYEFVCRNAPAYPLSELKADVERELDHLC 60

Query: 61  RLRFQPEELAYLAGLRYMKSDFIDFLALFRFQRKFIQVQTRGEQLCIVARGPQVHVMGFE 120
            L F+ +EL YL  LR+MKSDF+DFL +FRFQRKFI V   G  L I A GPQVHVMGFE
Sbjct: 61  TLAFRDDELLYLRSLRFMKSDFVDFLTVFRFQRKFITVAADGPALRIRAIGPQVHVMGFE 120

Query: 121 IFVLYIVNELYFRRLGTPATLVEARRRLQDKLALLHELASQPAGRHPFEFFDFGVRRRYS 180
           IFVL IVNELY RR    A+L EARRRLQ+K+ LL     +   ++PFEFFDFGVRRR+S
Sbjct: 121 IFVLCIVNELYLRRFDQQASLTEARRRLQEKIRLLKNFGKEATRKNPFEFFDFGVRRRFS 180

Query: 181 GAWQEEVVATLAREVPHYFKGSSNVWLAMQYDLVPIGTMAHEYLQSYQAFGVRLRDFQKA 240
            AW EEVV TLAREVP YF G+SNV LA +Y L PIGTMAHEYLQ+YQ+FGVRLRDFQKA
Sbjct: 181 AAWHEEVVVTLAREVPQYFTGTSNVHLAKKYGLTPIGTMAHEYLQAYQSFGVRLRDFQKA 240

Query: 241 ALEHWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300
           ALE WVQEYRGDLG+ALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDP EWGEKALAHY 
Sbjct: 241 ALEDWVQEYRGDLGIALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPIEWGEKALAHYA 300

Query: 301 KLRLDAHTKRLVFSDGLDLPQAIALYRHFSDRAMTGFGIGTNLSNDTGIPPLNIVMKLSS 360
           +LR+DA +KRLVFSD LDLP A +LYRHF+DR +TGFGIGTNLSNDTGIP LNIVMKL +
Sbjct: 301 RLRIDAGSKRLVFSDALDLPGAFSLYRHFADRTLTGFGIGTNLSNDTGIPALNIVMKLMA 360

Query: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLF 391
           CNGQ VAKLSDS GKTLC+DETFLAYLRQ+F
Sbjct: 361 CNGQPVAKLSDSAGKTLCRDETFLAYLRQVF 391


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 798,971
Number of extensions: 33575
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)