BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4450.p
         (565 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas a...   349   3e-97

>gi|134094248|ref|YP_001099323.1| NAD synthetase [Herminiimonas
           arsenicoxydans]
          Length = 537

 Score =  349 bits (895), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 314/568 (55%), Gaps = 39/568 (6%)

Query: 2   LRIAIAQCNPTIGDFDGNLALHLAALQRAARAGADLLVFPELSICGYYPGDLLEEPRFLG 61
           +++AIAQ N T+GD  GN A      +RAA  GAD+++ PELS+ GY P DLL    F  
Sbjct: 3   VKVAIAQINSTVGDLAGNRAKIAEFSRRAAEQGADIVLTPELSLVGYPPEDLLLRQSFYA 62

Query: 62  QAEQALQRLITATRDYPGLTAVIGAPRRNAGPGKPLFNALLALREGQIVAEYHKQLLPVY 121
           ++ QAL  L     +   L  V+G P    G     FNA   L  G+I A Y K  LP  
Sbjct: 63  KSAQALDALAADLAELKNLHVVVGHPFEKDGQ---RFNAASVLLNGKISATYCKHDLPNA 119

Query: 122 GVFDDGRHFEAGPEVACVLPLKGQRVGFLICEDGWNDELRSYRINPFQRLAEADAQLVVS 181
            VFD+ R+F +  + A V  +KG R G  ICED W  +  +       R A A AQ+++ 
Sbjct: 120 TVFDEKRYFSSCDQ-AVVFDVKGVRFGINICEDTWFPQAPA-------RAAAAGAQVLLV 171

Query: 182 INASPSDIGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPTQGLAFEA 241
            N SP  + K+  R  +  A      M+L+Y N VG QD+L++DG SF +        + 
Sbjct: 172 PNGSPYHMNKQHVRIDVMHANVTTHGMSLVYANLVGAQDELIFDGNSFVLDQAGETRAQL 231

Query: 242 ARLAEDFQVLAFEAGRFLRSDGSSDALPLQQALATPEFQRRQIILGLRDYARRCGFGKVV 301
               ED Q++ F  G+ L  DG+    P  +A        + ++LG+RDY  + GF   +
Sbjct: 232 QHCVEDLQIVEFRGGQPL--DGTIVEEPSVEAQVY-----KALVLGVRDYIGKNGFPGAL 284

Query: 302 VGSSGGIDSALTIALAAEALGARNVVAVTMPSIFSSTGSVDDSLELCRALGVTLFRHPIA 361
           +G SGG+DSALT+A+A +ALGA  V  + MPS +++  S+ DS ++ + +GV      I 
Sbjct: 285 IGMSGGVDSALTLAVAVDALGADKVRTIMMPSPYTAEISLLDSRDMVQRVGVRYDEIGIN 344

Query: 362 ELVREFEEGFARAFGAPLRGLPL----ENLQARVRGAILMEYSNGYGALLLTTGNKSEIS 417
           +      E F R      +GLP     EN+QAR+RG ILM  SN +GA++LTTGNKSE++
Sbjct: 345 DCF----EAFNRTLANEFKGLPEDATEENIQARIRGTILMALSNKHGAIVLTTGNKSEMA 400

Query: 418 VGYCTLYGDTNGGLGLIGDLYKTEVYALARHLNASADREIIPRAIIDKPPSAELAPDQRD 477
           VGYCTLYGD  GG  ++ D+ KT VY L  + N+ +D  +IP  I+ + PSAEL P Q D
Sbjct: 401 VGYCTLYGDMAGGFAVLKDIAKTLVYRLCAYRNSVSD--VIPERILTRAPSAELRPGQTD 458

Query: 478 TDSLPPYEVLDDILKWHIEGTRLPADEAQAAARAVEQLQASQQGAALVERICRMVALNEY 537
            DSLPPY++LD I++ ++E  +  AD   A  RA +           V RI  ++ +NEY
Sbjct: 459 QDSLPPYDILDAIMQMYMEENQSGADIIAAGYRAED-----------VARITHLIKINEY 507

Query: 538 KRRQSPPVIRVRARAFGSGRQIPIAVAF 565
           KRRQSP  IRV  RAFG   + PI   F
Sbjct: 508 KRRQSPVGIRVTHRAFGRDWRYPITSKF 535


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,022,584
Number of extensions: 41809
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 478
Effective length of database: 713,682
Effective search space: 341139996
Effective search space used: 341139996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)