BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4448.p
         (312 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg...    71   6e-14
gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin...    59   3e-10
gi|134093619|ref|YP_001098694.1| putative transcriptional regula...    54   7e-09

>gi|134093979|ref|YP_001099054.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 297

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 1   MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 60
           +E++ +  F++V E ++F R+A   ++TQP   + I+SLE  LG +LF R+S    LTPA
Sbjct: 3   IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62

Query: 61  GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMPHTLLLTVFPKLLSEIEKKIGTI 120
           G + +P A+ +L Q+     ++R   +GA   L  A   T   +V P  L E  +    +
Sbjct: 63  GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122

Query: 121 TTTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKALPS 180
              +        +  L++   D+ L          L  +   VLS       P + A P 
Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLS------EPLILAAPK 176

Query: 181 GL 182
           GL
Sbjct: 177 GL 178


>gi|134095322|ref|YP_001100397.1| methionine biosynthesis
           [Herminiimonas arsenicoxydans]
          Length = 306

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 1   MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPA 60
           +E++ ++  +++ E  N  R+A L NVTQ A   +++ LE   G +LF+R S P   TPA
Sbjct: 5   LELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVRFTPA 64

Query: 61  GESFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMP-HTLLLTVFPKLLSEIEKKIGT 119
           GE  + +A  +L Q  +    L     G    LR A+  HT    + P  +     +   
Sbjct: 65  GERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPA-MDVFRGRWPE 123

Query: 120 ITTTVMAGNVHDAVMALVERNCDL 143
           +   +++G   D V  L E   D+
Sbjct: 124 VELDIVSGFQADPVGLLYEHRADV 147


>gi|134093619|ref|YP_001098694.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 367

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 21/268 (7%)

Query: 3   IKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTPAGE 62
           ++ ++ F +V   L+FSR+A+  ++TQPA   +++ LE   G  LF++      LTP G 
Sbjct: 50  LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109

Query: 63  SFVPIAKEMLNQSMQARLVLRGQLAGAQSSLRFAMPHTLLLTVFPKLLSEIEKKIGTITT 122
             +  ++ ++ Q  +A   +  Q  G           +     FP+LL E  +    +T 
Sbjct: 110 ELLHYSRTIIQQFQEAEDAMT-QFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTL 168

Query: 123 TVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDTERYAVLSLGKEPLRPYVKALPSGL 182
            +   N    +  L     DL +     +    +DT          EP  P+   + +  
Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMV---RPPTDMDTI--------NEPFAPHPYVIVAA- 216

Query: 183 PKYVLPGTPNEPQPLLAYSPY------SSLSRIVEKALHSSQRRVHLFRRFETDLAEGLK 236
           P + L    N P   L + P+      S     +E    S    +++    E    E +K
Sbjct: 217 PDHHLVSKKNIPMSTLIHEPFVVREKGSDTWHSMEDGFGSRIDDLNI--AMEIKSTETIK 274

Query: 237 SMAVEGHGIAWLPASAVAREIAEGKLTL 264
              + G GI++L A  ++ E+  G LT+
Sbjct: 275 QAVIAGMGISFLSAHTISMELQAGSLTV 302


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 539,065
Number of extensions: 18950
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 230
Effective length of database: 730,157
Effective search space: 167936110
Effective search space used: 167936110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)