BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4446.p (362 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [He... 244 6e-66 gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidor... 240 7e-65 gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN... 129 2e-31 >gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [Herminiimonas arsenicoxydans] Length = 368 Score = 244 bits (622), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 137/345 (39%), Positives = 196/345 (56%), Gaps = 7/345 (2%) Query: 1 MSALFTPFKLNELNLRNRIAVPPMCQYMAVDGKVNAWHLSHYASLARGGAGLVIVEATAV 60 M+ LF P KL ++ LRNRI +PPMCQY A DG +AWH HY S A GGAGL+I+EATAV Sbjct: 1 MATLFEPLKLRDIKLRNRIGIPPMCQYSAQDGMPSAWHTVHYGSRAIGGAGLMILEATAV 60 Query: 61 APEGRITPACTGIWSNELAQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120 + +GRI+ GIW + + + + IQ+ HAGRKA W+ + Sbjct: 61 SEDGRISTGDLGIWKDAHIEPLSHIARFATENECAAAIQLAHAGRKAGVALGWQEQGSLP 120 Query: 121 ADDPRGWDTLSPSAIAYGRGLPK--VPKAMSLEDIARVRQNFVDAAIRARDAGFEWLELH 178 ++ GW T +PS IA+G PK P +++ +I + F AA RA AGF +E+H Sbjct: 121 PNE-GGWRTHAPSPIAFG---PKFATPVELNVNEITTIVATFASAARRALAAGFPVIEIH 176 Query: 179 FAHGYLGQSFFSAHTNQRDDLYGGSVENRARFLLETLRAVRQVWPQHLALTVRFGVLEYD 238 AHGYL F S +N+R D YGGS NR R L E + +VR VWP L + VR ++ Sbjct: 177 AAHGYLLHQFLSPLSNKRTDDYGGSFINRTRMLREVITSVRAVWPDRLPMLVRLSATDWA 236 Query: 239 GRDEQTLLESIGLVRQFKDSGMDMISVTVGFTIAEVQIPWGPAFLGPIAKRVRDEAGVPV 298 + E+I L RQ G+D++ V+ G + +V +P GP + + R+R E+G+ Sbjct: 237 DHG-WNIEETIELCRQMAPLGVDLVDVSSGGLVPDVTVPEGPGYQTEFSARIRRESGMRT 295 Query: 299 SSAWGFGTPELAERAVKEGQLDLVMVGRSHLVNPHWPYQAAKELG 343 S+ +PE A+ ++ Q DLV++GR L +P+WP AA+ LG Sbjct: 296 SAVGMITSPEQADHVIRSEQADLVLIGREILRDPYWPLHAARALG 340 >gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidoreductase [Herminiimonas arsenicoxydans] Length = 370 Score = 240 bits (613), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 195/359 (54%), Gaps = 9/359 (2%) Query: 1 MSALFTPFKLNELNLRNRIAVPPMCQYMAVDGKVNAWHLSHYASLARGGAGLVIVEATAV 60 MS LF+P+ L L L NRI V PMCQY A +G WH+ H LA GAG++++EATAV Sbjct: 1 MSPLFSPYTLRSLTLPNRIVVSPMCQYSANNGAATEWHMIHLGHLALSGAGMLMIEATAV 60 Query: 61 APEGRITPACTGIWSNELAQAFVPVVQAIKAAGAVPGI-QIGHAGRKASANRPWEGDDHI 119 PEGRITP G+W + A VPV+ AI+ + + Q+GHAGRKAS+ PWEG + Sbjct: 61 EPEGRITPKDLGLWDDATEAALVPVLAAIRKHSKIAVVMQLGHAGRKASSKVPWEGGQQL 120 Query: 120 AADDPRGWDTLSPSAIAYGRGLPKVPKAMSLEDIARVRQNFVDAAIRARDAGFEWLELHF 179 + D GW + +PSA++ G + P A+ + R+R FV AA RA G + LE+H Sbjct: 121 SVAD-GGWMSYAPSAVSQKEGEVE-PLALDAAGLRRLRDAFVLAAKRAERLGIDGLEVHA 178 Query: 180 AHGYLGQSFFSAHTNQRDDLYGGSVENRARFLLETLRAVRQVWPQHLALTVRFGVLEYDG 239 AHGYL F S N R D YGGS+ENR RF LE AVR V+P + +R ++ Sbjct: 179 AHGYLLHQFLSPIANHRTDEYGGSLENRMRFPLEVFDAVRAVFPADKPVGIRVSATDWM- 237 Query: 240 RDEQTLLESIGLVRQFKDSGMDMISVTVGFTIAEVQIPWGPAFLGPIAKRVRDEAGVPVS 299 + L ++I + K +D I V+ G +I GP + A+ V++ GV Sbjct: 238 ENGWNLEQTIAFAAELKKRDVDWIDVSSGGISPLQKITIGPGYQVAFAQGVKEATGVNTM 297 Query: 300 SAWGFGTPELAERAVKEGQLDLVMVGRSHLVNPHWPYQAAKELGVERPSWTLPAPYAHW 358 + P+ AE + G+ D + + R L +P WP+ AA LG T+ AP +W Sbjct: 298 AVGLITEPQQAEEIIASGKADFIAMARGILYDPRWPWHAAAALGA-----TVEAPPQYW 351 >gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN-linked [Herminiimonas arsenicoxydans] Length = 352 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 158/336 (47%), Gaps = 24/336 (7%) Query: 4 LFTPFKLNELNLRNRIAVPPMCQYMAVDGKV--NAWHLSHYASLARGGAGLVIVEATAVA 61 LFTP K+ ++ L NR+ + P+ + AV G N + +Y + R AGL++ EATAV Sbjct: 5 LFTPIKVGDITLPNRVIMAPLTRSRAVGGGRVPNDLMVEYY--VQRASAGLILSEATAVT 62 Query: 62 PEGRITPACTGIWSNELAQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA- 120 P+G GIWS+E + V A+ AG + +Q+ H GR S G+ +A Sbjct: 63 PQGVGYADTPGIWSDEQVAGWKKVTDAVHKAGGLISLQLWHVGR-ISHPMFLNGELPVAP 121 Query: 121 -ADDPRGWDTLSPSAIAYGRGLPKVPKAMSLEDIARVRQNFVDAAIRARDAGFEWLELHF 179 A P G ++ + Y P+A+ L++I + + A A+ AGF+ +E+H Sbjct: 122 SAIQPEGHVSIVRPQVGY-----VTPRALELDEIPGIVAAYRKGAENAKLAGFDGVEVHG 176 Query: 180 AHGYLGQSFFSAHTNQRDDLYGGSVENRARFLLETLRAVRQVWPQHLALTVRFGVLEYDG 239 A+GYL F + TNQR D+YGGS+ENRAR +LE + +VW R G L Sbjct: 177 ANGYLLDQFLQSSTNQRTDIYGGSIENRARLMLEVVDVCIEVWGAG-----RVG-LHLAP 230 Query: 240 RDEQTLLESIGLVRQFKDSGMDMISVTVGFTIAEVQIPWGPAFLGPIAKRVRDEAGVPVS 299 R + L F +M + F A + G LGP K+ GV ++ Sbjct: 231 RGDSHDLSDATPAETFGYVAAEMGKRGIAFICARESL--GENRLGPQLKKAF--GGVYIA 286 Query: 300 SAWGFGTPELAERAVKEGQLDLVMVGRSHLVNPHWP 335 + T E A + G+ D V G+ + NP P Sbjct: 287 NEQ--MTKETAANVIATGEADAVAFGKLFIANPDLP 320 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 746,371 Number of extensions: 32289 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 3 Length of query: 362 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 279 Effective length of database: 726,862 Effective search space: 202794498 Effective search space used: 202794498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)