BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4439.p
         (559 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094831|ref|YP_001099906.1| putative signal peptide [Hermin...   365   e-102

>gi|134094831|ref|YP_001099906.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 700

 Score =  365 bits (936), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 264/417 (63%), Gaps = 41/417 (9%)

Query: 1   MTTRNKTSAIIVSASLLGAVLALSACQKQD-----TPPPTAAAAPAAPTTPPYTPPTAQQ 55
           M T       +V++SL+ ++LA++ C K D      PP  A      PT  PYTPPTA+Q
Sbjct: 23  MNTNKSKLTTLVASSLVISLLAVAGCGKADMSTTTPPPAAAIPPTPTPTPTPYTPPTAEQ 82

Query: 56  LSQMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNSALKGDILQAAEEKQPWDVSV 115
           L QMVAPIALFPDKLVAQVLAG++YPDQI AAN WLGQN +LKG+ LQ A   QPWDVSV
Sbjct: 83  LLQMVAPIALFPDKLVAQVLAGSSYPDQITAANLWLGQNPSLKGEALQNAANLQPWDVSV 142

Query: 116 KSLTMFPAVLSQMASNEDWTRSLGDAFVNDPNDVMNAIQELRLRAQQAGNLKSSSQLRVS 175
           KSLT FPAVL+QMA+N  WT +LG+A+VND +DVMNAIQ +RLRAQQ+GNLK+S Q+RV+
Sbjct: 143 KSLTAFPAVLAQMANNIQWTTALGEAYVNDSDDVMNAIQTMRLRAQQSGNLKTSQQMRVT 202

Query: 176 STVRSSESVRVENAPEPRTV-YAGAPVIPPPPQTIVIESSQPDTVYVPTYNPAVVYGPPV 234
           S+ R         AP P     AG  VI PP QTIVIES+QPD VYVP YNPA+VYG P+
Sbjct: 203 SSPRL--------APPPDYADEAGYFVIAPPSQTIVIESAQPDMVYVPNYNPALVYGAPI 254

Query: 235 PVYPGYVYRPPSPVANEVVVGALSFGVGVFVGEAISHHSDWGWGWHDWGMHWGGSGGGE- 293
           PVYP YVY P     +    G +SFG+G+ VG AI+HH   GWGWH WGM+WGG G G  
Sbjct: 255 PVYPSYVYNPGYSSGDMFTAGIISFGLGILVGSAINHHD--GWGWHSWGMNWGGRGPGSG 312

Query: 294 --------WQRPAVVYKNATYVSHSTTIVNRVTNNNVTINNTRVVNNNVNNVSNVNNVNN 345
                   W+ P+VVY + TYVS STTI+NR  N     NN    NNN    S  NN   
Sbjct: 313 PDYGANHGWRHPSVVYNDTTYVSRSTTIINRNHNPARISNNFGTPNNNAPGGS--NNAGR 370

Query: 346 VNNVNNVNNVRNVEQRNITNYNQTRIDNRHETAAPAATAMTMPHFTASDTRVGAMPE 402
            N      N R  + +N++    T+  NR          MT PHF A DTR GA P+
Sbjct: 371 PNFSGGTPNFR-PQGQNLS----TQAPNR---------PMTAPHFNAGDTRPGARPD 413


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.123    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,567
Number of extensions: 11232
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 473
Effective length of database: 716,977
Effective search space: 339130121
Effective search space used: 339130121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)