BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4437.p (295 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin... 193 1e-50 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 78 5e-16 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 69 3e-13 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 64 6e-12 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 64 8e-12 >gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Herminiimonas arsenicoxydans] Length = 306 Score = 193 bits (490), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 164/293 (55%), Gaps = 1/293 (0%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 +L+ HL + + G+L AA +L+VTQSALSH +K+LE GT ++ R+ +R T Sbjct: 4 ILELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVRFTP 63 Query: 61 AGQYLLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AG+ LL +A+ VLPQ++ E L + AQG G LRI +ECH C+ WL+ + + WP+ Sbjct: 64 AGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPE 123 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLADAD 180 V++D+ FQ +G L+ + D+ + + + + +F +E V +VA DH LAD + Sbjct: 124 VELDIVSGFQADPVGLLYEHRADVAIVAEIDPDETVDYHALFRFEIVALVAHDHPLADKE 183 Query: 181 YVKPKQLSNEVLVSYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 ++ + + L++YPVP D LD+ Q L PAGI R +T E T MLQ+VAS RG+A Sbjct: 184 FLVAEDFIGDTLITYPVPDDMLDVVRQVLKPAGIKVER-RTTELTVAMLQLVASRRGIAT 242 Query: 241 LPRWLVLEYAQQMAVVPVRLGKHGIAKHIYLGARESDVEIDYLRAFIDEARQA 293 LP W Y + V R+ G+ +Y E YL F+ R++ Sbjct: 243 LPVWAAQNYLNRDYVKAKRITADGLTGRLYAACLPEVSEKPYLADFVTTTRES 295 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 84/161 (52%) Query: 17 GSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYLLAVANRVLPQL 76 GS+TA A H++ ++ S ++ +E+ LG + +R R + T G+ L+ A L Q Sbjct: 18 GSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVGKALVHHARIALRQQ 77 Query: 77 SLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVDVKQKFQFGGIGA 136 L ++AQG +G +RI ++L + +S +LA P+V++D++++ F + A Sbjct: 78 ERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNVNIDLEERLSFEIVSA 137 Query: 137 LFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLA 177 L ID+ + D +D G P D LVVA DH L+ Sbjct: 138 LTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLS 178 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 6/244 (2%) Query: 6 HLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYL 65 L + V R+ AA HV Q LS ++KKLE +LG ++ R G + +T G + Sbjct: 5 ELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGVQI 64 Query: 66 LAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVDV 125 +A A RVL Q + +E +Q G R+G+ L +V + P + + + Sbjct: 65 VAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQMPLVL 124 Query: 126 KQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLADADYVKPK 185 ++ F + L EID + P+ GL+ +PV+D V+ V H A+ V Sbjct: 125 QENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSSVTTD 184 Query: 186 QLSNEVLV----SYPVPVDRLDIYTQF--LAPAGIVPRRHKTIETTDIMLQMVASGRGVA 239 L +E ++ + L++ + + +G R + + + MVASG G+ Sbjct: 185 NLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASGIGIT 244 Query: 240 ALPR 243 LP+ Sbjct: 245 VLPQ 248 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 64.3 bits (155), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 8/288 (2%) Query: 7 LSIVQEVERQG-SLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLR-LTQAGQY 64 L ++E R G +LT A VL +Q +S +++LE++LG DI+ R G+ L LT G+ Sbjct: 6 LRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRG 65 Query: 65 LLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVD 124 +L + +R+L + + +++A E G L + L +VV + A +P V + Sbjct: 66 ILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFPKVRIA 125 Query: 125 VKQKFQFGGIGALFGYEIDLLVTPDPLDK-PGLVFEPVFDYEQVLVVAADHRLADADYVK 183 ++Q + + D+ + + L + LV P + + +VV H L V Sbjct: 126 LQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLSHAPVT 185 Query: 184 PKQLSNEVLVSYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAALPR 243 + L+ L++Y + A I P T +D++ Q V+ G GV + Sbjct: 186 LEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGVGIVAS 245 Query: 244 WLVLEYAQQ-MAVVPVRLGKHGIAKHIY-LGARESDVEIDYLRAFIDE 289 V +AV+ G H A+++ L R Y +FI + Sbjct: 246 MAVQHNGSHGLAVID---GSHLFAQNVTRLAVRRGAYLRQYTYSFIQQ 290 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 24/237 (10%) Query: 22 AAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYLLAVANRVLPQLSLAEE 81 AA LH+TQ LS +++ LE LG ++ R R + LT AG LL A R+L Q + + Sbjct: 23 AAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPAGSALLPEAQRILQQTAALPD 82 Query: 82 RLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVDVKQKFQFGGIGALFGYE 141 +R+ G G L + Y L + + ++P V++D+++ + L Sbjct: 83 LMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGVEIDLREATTDVQLDDLMQGR 142 Query: 142 ID--LLVTPDPLDKPGLVFEPVFDYEQVLVVAADHRLADADYVKPKQ-LSNEVLVSYPVP 198 ID LL+ P P DK L + + + L++AA L +K KQ ++ + L P Sbjct: 143 IDVGLLIPPLP-DKAKLQLDYLPVLSEPLILAAPKGL---KALKGKQSVALQSLAELP-- 196 Query: 199 VDRLDIYTQFLAP------------AGIVPRRHKTIETTDIMLQMVASGRGVAALPR 243 L I+ + +AP AG+ P + ++ +V++G G+A +P+ Sbjct: 197 ---LIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSAGMGIALVPQ 250 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 573,054 Number of extensions: 24272 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 11 Length of query: 295 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 214 Effective length of database: 733,452 Effective search space: 156958728 Effective search space used: 156958728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)