BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4435.p (237 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 164 4e-42 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 162 1e-41 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 138 2e-34 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 121 3e-29 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 118 3e-28 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 164 bits (414), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 127/214 (59%), Gaps = 9/214 (4%) Query: 21 YLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGFALCKAVRRKSN-VPVI 79 YL + + V A A + R + L++LD+MLP DG ++C+ +R + P+I Sbjct: 38 YLSEQGFNVVTAESAQAMNKLWLR--ERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPII 95 Query: 80 MLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRIGIDS-----SAAPRYYR 134 MLTA ++ DR+VGLE+GADDYIAKP++PREL+ARI A+ RRIG D S P+ + Sbjct: 96 MLTAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFT 155 Query: 135 FAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAGPLD 194 F F+LD RTL + + VPLT ++ +LK F H L R L E RGR+ D Sbjct: 156 FGEFTLDLGTRTL-KKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFD 214 Query: 195 RSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVF 228 RSLDVQIS+LR + P I+TV G GYVF Sbjct: 215 RSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 248 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 162 bits (410), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 7 IVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVA--DELSLVILDVMLPDTDGF 64 +++DDQ+ ++ YL +N ++V + A L + Q + + ++V+LD+MLPD DG Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 65 ALCKAVRR----KSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 +C+ +R + +P++MLTA D DRVVGLELGADDYI KP+ PRELLAR++A+ R Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 121 RIGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNV 180 R + RF +D R + Q P+T + LL E G VL R Sbjct: 121 RQHTTPATDGHVLRFGRLEIDLDARMIR-LDDQDKPVTSYQFNLLAAMAERAGRVLSREQ 179 Query: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFS 229 L + +G DRS+DV I +LR + D +QP I TVRGAGYVF+ Sbjct: 180 LMDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFA 228 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 138 bits (348), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 4 KILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDG 63 K+LIV+D+ KT L+ L + + V A++G V L+ILDVMLPD DG Sbjct: 2 KLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLD--GHHLAVTGNYDLIILDVMLPDIDG 59 Query: 64 FALCKAVRRK-SNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 + + +A+R +NVP + LTA DRV GLELGADDY+ KP++ ELLAR++ + RR Sbjct: 60 WKILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRR- 118 Query: 123 GIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVLC 182 GI S R + + LD R T RAG+ + LT ++ LL++ V H G+VL R+++ Sbjct: 119 GIPSPLVDR-MQVSDLVLDLARRAAT-RAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIA 176 Query: 183 EETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFS 229 + + +DV I +LR +++D +P LI T+RG GYV Sbjct: 177 SQIWDINFNSDTNVIDVAIRRLRSKMDD-DYEPKLISTIRGVGYVLE 222 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 121 bits (303), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 13/229 (5%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHD-GAAFLSEFQRVADELSLVILDVMLPDTDG 63 ILIV+D+ L+ L+ + V+ G A+ QR+ L++LD MLPD G Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLP---QLILLDWMLPDQSG 64 Query: 64 FAL---CKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHR 120 L +A R+ + +P+IMLTA S E D++ GL+ GADDY+ KP+SPREL ARI A+ R Sbjct: 65 LRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLR 124 Query: 121 RIGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNV 180 R + A SLD + +++ +I + +++LLK+F+ HP V R+ Sbjct: 125 RKTPEH--AQTLMTAGSISLDPISCSVSMNDEKI-DIGHAEFKLLKFFLAHPDRVFSRSQ 181 Query: 181 LCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFS 229 L ++ G +R++DV + +LR L + HLIKTVR GY+ S Sbjct: 182 LLDKVWGDHVVIEERTVDVHVLRLRKALKEAE---HLIKTVRSVGYMLS 227 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 11/228 (4%) Query: 5 ILIVDDDQKTRTLLKAYLEKNQYEVSLAHDGAAFLSEFQRVADELSLVILDVMLPDTDGF 64 IL+V+D+ LL+ LE + V A AA Q L++LD MLPD G Sbjct: 8 ILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQ--IRPPHLILLDWMLPDQSGL 65 Query: 65 ALCKAVRRKSN---VPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRR 121 L VR +P+IMLTA S E D+V GLE GADDY+ KP+SPREL+AR+ + + Sbjct: 66 QLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLKH 125 Query: 122 IGIDSSAAPRYYRFAGFSLDTVERTLTDRAGQIVPLTGMDYQLLKYFVEHPGDVLDRNVL 181 A + LD R ++ I + +++LLKY + HP V R+ L Sbjct: 126 KV--PEHAQETMKAGPIRLDPASRMVSVGTKNIT-IGHAEFKLLKYLLAHPNHVYSRDQL 182 Query: 182 CEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFS 229 + GR +R++DV + +LR L +G +LIKTVRG GY+ + Sbjct: 183 IDRVWGRHIAIDERTVDVNVLRLRKVLGEGR---YLIKTVRGVGYMLT 227 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 445,080 Number of extensions: 18223 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 24 Length of query: 237 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 158 Effective length of database: 740,042 Effective search space: 116926636 Effective search space used: 116926636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)