BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4434.p (506 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095107|ref|YP_001100182.1| putative oxidative stress resis... 135 5e-33 gi|134096138|ref|YP_001101213.1| two component sensor histidine ... 99 5e-22 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 79 5e-16 gi|134093340|ref|YP_001098415.1| putative two-component sensor h... 70 3e-13 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 69 7e-13 >gi|134095107|ref|YP_001100182.1| putative oxidative stress resistance two-coponent transmembrane sensor histidine kinase transcription regulator [Herminiimonas arsenicoxydans] Length = 455 Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 136/263 (51%), Gaps = 10/263 (3%) Query: 248 TRPLAALADAAEAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLEDRERLFVSIS 307 +PLA L A A G+ LPESG E + +F+ M + + R DR + IS Sbjct: 184 NQPLARLTAATRAIANGQWPAPLPESGPTEIREANHSFNQMVDDLNRVESDRAVVLAGIS 243 Query: 308 HDLRTPITRLKLRTEL--MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRL 365 HDLRTP+ R++L E+ + DDA R DL+++D ++ L K D ++ V L Sbjct: 244 HDLRTPLARMQLEVEMAGLPDDA-RKGMQSDLEQMDAIIGQFLDYAKPVDSSHFKS-VDL 301 Query: 366 DALVLRMIRD-ARLGGHEIA-FTPSGINVMAKPLALKRAIGNLFDNALYYGQKVE---IS 420 AL+ + ARL ++ F + V+ + +KR + NL +NA YG+ + + Sbjct: 302 TALLSEAAHEAARLPDVQVHPFMEDKVTVLGNAIDIKRVVNNLVENARRYGKATDAHHVD 361 Query: 421 IRPSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIV 480 I EGD V +EI DHG GVP + + L +P+ R++ R + G GLGL I IV Sbjct: 362 IDICCRIEGDKVMLEIADHGAGVPAEEIARLLRPFTRMDSARG-QANGAGLGLAIVDRIV 420 Query: 481 QAHGGELLLRNHPEGGLMATIIL 503 + HGG+L L N GGL I+L Sbjct: 421 KRHGGKLHLFNRDGGGLTVQIVL 443 >gi|134096138|ref|YP_001101213.1| two component sensor histidine kinase protein [Herminiimonas arsenicoxydans] Length = 405 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 126/251 (50%), Gaps = 9/251 (3%) Query: 259 EAFGKGETVPRLPESGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLK 318 EA G G+ R+ G E + A +F+ RI+ ++ ++ L + SH+LR+P+ R++ Sbjct: 160 EALGAGQLSTRIAVEGQDEVGRLASSFNRSAARIEALVDAQKALLANASHELRSPLARIR 219 Query: 319 LRTELMDDDA---MRTDFHDDLDELDMMVKGALQSVK-DSDIHENRTEVRLDALVLRMIR 374 + ELM A +R++ ++ ELD ++ L + + D+ +T +D L Sbjct: 220 MAIELMGPAAQPEIRSELKRNIGELDQLIDEILLASRLDATADATQTFETIDLTALLAEE 279 Query: 375 DARLGGHEIAFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGDLVEI 434 AR+G I + L+R + NL +NA YG I++ + A G+ V + Sbjct: 280 CARIGAQ---LDAQAIELSGDARLLRRLVRNLLENARRYGNDTPITVTLA-AAPGNTVLL 335 Query: 435 EIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIVQAHGGELLLRNHPE 494 ++ D GPGVP +F+P+ R+ G + GG+GLGL + R I + HGG+++ E Sbjct: 336 QVCDGGPGVPVAERENIFEPFYRV-AGASEREGGVGLGLSLVRQIARRHGGDVVYVARDE 394 Query: 495 GGLMATIILPA 505 G + LPA Sbjct: 395 PGSCFRVTLPA 405 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 24/224 (10%) Query: 299 RERLFVSISHDLRTPITRLKLRTELM---------DDDAMRTDFHDDLDELDMMVKGALQ 349 R L ++SHDLRTP+T L +E + + HD+ + +V L Sbjct: 685 RNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDEARRMSNLVSNLLD 744 Query: 350 --SVKDSDIHENRTEVRLDALVLRMIRDAR--LGGHEIA--FTPSGINVMAKPLALKRAI 403 ++ ++ N ++ + +V +R ++ + HEI P V + ++R + Sbjct: 745 MARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLPLVRFDAVLIERVL 804 Query: 404 GNLFDNALYY---GQKVEISIRPSPGAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEH 460 NL +NA Y G ++ I+ S G +E+ + D+GPG+P +F + R E Sbjct: 805 CNLIENAAKYTPAGSRIVIAAEIS----GRFLEVSVYDNGPGLPAGQEEAIFDKFTRGE- 859 Query: 461 GRASNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMATIILP 504 R S + G+GLGL I R IV+AH G + + P+GG LP Sbjct: 860 -RESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902 >gi|134093340|ref|YP_001098415.1| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 428 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 147/320 (45%), Gaps = 40/320 (12%) Query: 211 NPYFLDSDNPL---WLDRLVLQ--GLSLAAILLLTI-LVVRWTTRPLAALADAAEAFGKG 264 + +F+ SD+ +L+ L+ G A +LL I L + R +A + + A A + Sbjct: 107 DDHFVLSDDTTDFEFLELLIFISIGAGFATSMLLAIALGLVSAKRIIAPVTELAAAVERN 166 Query: 265 ETVPRLPE-SGSREYVKTARAFSGMRERIKRYLEDRERLFVS-ISHDLRTPITRLKLRTE 322 + LP + E ARAF+ ++++++L D E+LF +SH+LRTP+T + +E Sbjct: 167 DAPTMLPSLTTQNEIGMLARAFAKRTDQLQQFLAD-EKLFTGDVSHELRTPLTIVLGASE 225 Query: 323 LMDDDAMRTDFHDDLDELDMMVK------------GALQSVKDSDIHENRTEVRLDALVL 370 L ++ DEL + + AL + S +++ L L+ Sbjct: 226 L-----LKVRLAQSPDELLIAERIRRVAAEASERVSALLLLSQSPETLGGSQLSLTHLIA 280 Query: 371 RMIRDAR--LGGH--EIAFTPSG-INVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSP 425 R I + L G +I F SG I V A+ AIGNL NA Y + E ++R Sbjct: 281 REIERCQQLLAGKPVQIQFQESGDIRVYARAELAGIAIGNLLRNACQYTE--EGTVRVQL 338 Query: 426 GAEGDLVEIEIRDHGPGVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIVQAHGG 485 A+ ++ I D+GPGVPE+ LF+ +VR G + G GLGL I + + G Sbjct: 339 TAQ----QLTIEDNGPGVPENVRARLFERFVR---GSNNQHVGSGLGLAIVKRVADHLGW 391 Query: 486 ELLLRNHPEGGLMATIILPA 505 ++ GG T+ P+ Sbjct: 392 QIEYATPSGGGSRFTLKFPS 411 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 68.6 bits (166), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 37/308 (12%) Query: 227 VLQGLSLAAILLLTI-LVVRWTT-----RPLAALADAAEAFGKGETVPRLPESGSREYVK 280 +++G+ + ++L I L++ W RPLA L A + P E + Sbjct: 197 IIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRPDDLSPIDSGHVPEEIIP 256 Query: 281 TARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRTELMDDDAMRTDFHDDLDEL 340 + + M ER+ + ++ ++R +H ++TP+ +++++EL + H L++L Sbjct: 257 LVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDHAEIHKSLEQL 316 Query: 341 DMMVKGALQSVKD---SDIHENRTEVRLDALVLRMIRDARLGGH-----------EIAFT 386 K A + V EN+T VL + AR ++ F Sbjct: 317 AKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARDTVQNWVQTSFNRKIDLGFE 376 Query: 387 PSGINVMAKPLA--LKRAIGNLFDNALYY---GQKVEISIRPSPGAEGDLVEIEIRDHGP 441 VMA+ A L + NL DNAL Y G + +R + L +E+ D+GP Sbjct: 377 QPDEAVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTD--QQAGLAFLEVEDNGP 434 Query: 442 GVPEDAMRTLFQPYVRLEHGRASNSGGMGLGLGISRNIVQAHGGELLLRNHPE------- 494 G+ +F+ + R+ SN G GLGL I R I H E+ + N+P Sbjct: 435 GIAPHERSHIFERFYRI---LGSNVEGSGLGLAIVREIALQHNAEIEILNNPRCQGQKRP 491 Query: 495 GGLMATII 502 G LM I+ Sbjct: 492 GCLMRVIL 499 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 876,642 Number of extensions: 34538 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 12 Length of query: 506 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 420 Effective length of database: 716,977 Effective search space: 301130340 Effective search space used: 301130340 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)