BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4433.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...    94   7e-21

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score = 94.4 bits (233), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 139/309 (44%), Gaps = 58/309 (18%)

Query: 22  SGLLLPAISLGLWQNFGGVDNFETGRAILRRAFDRGVTHFDLANNYGPPAGSAEDNFGRW 81
           SG  +P +  G W             A LR   D G+T  D A  YG   G++E   G  
Sbjct: 8   SGEAVPVLGQGTWYMGDHASRRAEEIATLRLGLDFGMTLIDTAEMYGD--GASEKLVGEA 65

Query: 82  MAKDFLPYRDELVISSKAGWQMWPGPYGGPSGARKH-LIASCEQSLKRMGLDYVDIFYSH 140
           +A      RDE+ + SK            PS A +H  IA+CE+SLKR+G D +D++  H
Sbjct: 66  IAG----RRDEVFLVSKV----------LPSNATRHGTIAACERSLKRLGTDRIDLYLLH 111

Query: 141 RVDPDTPLEETMGALAHLHRQGKALYVGISSYSPELTRQAAAILKSEGVPLLIHQPNYSM 200
                TP  ET+ A   L   GK  + G+S+   +  R+ A    S G  + ++Q  Y++
Sbjct: 112 WRG-RTPFAETIAAFEALQDAGKIRHWGVSNMDVDDMREIAR--ASGGEAVAVNQVLYNL 168

Query: 201 LNRAIEGGLLPALEELGVGCIGFSPLAQGLLTSKYLGGVPEGARVTRAPSLPQRMLSEEN 260
             R IE  LLP  ++ G+  + +SP+ QG              R+T +P           
Sbjct: 169 TRRGIEYDLLPQAQQRGLPIMAYSPIEQG--------------RLTESPE---------- 204

Query: 261 LARIRALNEIAQQRGQTLAQMAIAWVLRDARVTSALIGART---VEQLDDALDALKKPDF 317
                 + +IA + G + AQ+A+AWVLR   V  A+  A T   V+Q   ALD       
Sbjct: 205 ------VQDIADRHGASPAQIALAWVLRQPGVI-AIPKASTPAHVQQNRAALDI----KL 253

Query: 318 SADELARID 326
           +A +LA +D
Sbjct: 254 TAQDLAELD 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 659,329
Number of extensions: 27100
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)