BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4430.p (598 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 301 6e-83 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 296 2e-81 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 291 5e-80 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 284 7e-78 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 283 2e-77 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 301 bits (771), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 197/379 (51%), Positives = 259/379 (68%), Gaps = 10/379 (2%) Query: 226 GSEDKVSAMMLDGAAKLVKGLPIKGTEWTLVLAMDKADVTAGMRNATRSALIALVLVALV 285 G ++V ++++ L + L K T+ + L M K+ T + T ++ V V Sbjct: 140 GRNEEVEDILVNKMPPLFQSLT-KSTDELVELQM-KSAATGYQDSQTLFHYFRIIAVVGV 197 Query: 286 AAGIMSLITTAVFL------RLSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQISRSFNK 339 G++ + A FL L + D ++SG DLT + ++E+ + K Sbjct: 198 LLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASG--DLTSNIEVKSRNEMGTLMLGLQK 255 Query: 340 FVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEQLTSTVQQ 399 ++T + VR S + ++TEIA GN DLS+RTEQQA +LEETAS+ME+LTSTV+Q Sbjct: 256 MQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQ 315 Query: 400 NSENARRANELAGNASQIAAKGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNIL 459 N++NAR+AN+LA +AS +A KGG VV +VV+TM+AIN S+R+I DII VIDGIAFQTNIL Sbjct: 316 NTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNIL 375 Query: 460 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDTSVSKVADGGVLVAQA 519 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LID SV+KV G LVA+A Sbjct: 376 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEA 435 Query: 520 GQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAA 579 G TM ++V S++ V+ I+SEI AS EQ+ GI++VN AI +DE TQQNAALVEQAAAAA Sbjct: 436 GTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAA 495 Query: 580 KSLQDEAHRLSVLVGGFKM 598 SL+D+A LS +V FK+ Sbjct: 496 SSLRDQATNLSTVVSVFKL 514 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 296 bits (759), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 184/331 (55%), Positives = 237/331 (71%), Gaps = 11/331 (3%) Query: 273 RSALIALVLVALVAAGIMSLITTAVFLRLSRVRRAMDNLSS-----GNGDLTLRLAEDGQ 327 R LI L LVAL +++ + T + + +D S +GDLT R+ D + Sbjct: 187 RMLLIVLGLVALTLGIVLAWMLT------RSITKPLDYAVSVARLVASGDLTGRITVDSK 240 Query: 328 DEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETA 387 DE Q+ ++ + +T + VR DT+ +S +IA+GN DLS+RTE+QA +LEETA Sbjct: 241 DETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETA 300 Query: 388 SAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAINASSRQIADIIT 447 S+ME+LTSTV+QN++NAR+AN+LA AS +A KGG VV VV TM+ IN S+R+I DII Sbjct: 301 SSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIG 360 Query: 448 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDTSVS 507 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LID SV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVD 420 Query: 508 KVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVNLAITHIDEGTQQ 567 KV G LVA+AG TM ++V S++ V+ I++EI AS EQ+ GI++VN AI +D+ TQQ Sbjct: 421 KVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQ 480 Query: 568 NAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 NAALVE+AAAAA+SL ++A L+ V FK+ Sbjct: 481 NAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 291 bits (746), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 180/326 (55%), Positives = 240/326 (73%), Gaps = 7/326 (2%) Query: 274 SALIALVLV-ALVAAGIMSLITTAVFLRLSRVRRAMDNLSSGNGDLTLRLAEDGQDEVTQ 332 +A IAL+L+ A + AGI +T L++ + L++G DLT RL DE+ Sbjct: 182 AACIALLLLTACLYAGIRKTVTGP----LAQATQLARQLATG--DLTSRLETKRTDEIGL 235 Query: 333 ISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEQ 392 + R+ N + ++ ++R ++T+ + EIA GN DLS+RTEQQA +LEETASAME+ Sbjct: 236 LLRAVNSIGQGLANVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAMEE 295 Query: 393 LTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAINASSRQIADIITVIDGI 452 +TSTV++N+ NA +AN LA A+++A KGG VV VV TM++IN SS++IADII+VIDGI Sbjct: 296 MTSTVKENAANAEQANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVIDGI 355 Query: 453 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDTSVSKVADG 512 AFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS+ AA+EIK LI+ SVSKV G Sbjct: 356 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQSG 415 Query: 513 GVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVNLAITHIDEGTQQNAALV 572 LVA AG TM+++VSSI+ V I+ EI+ AS EQ+ GI++VN AI +D+ TQQNAALV Sbjct: 416 SKLVAHAGATMDEVVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAALV 475 Query: 573 EQAAAAAKSLQDEAHRLSVLVGGFKM 598 EQAAA+A+SLQ++ L+ +V F + Sbjct: 476 EQAAASAESLQNQTTELNNVVSVFTI 501 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 284 bits (727), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 153/253 (60%), Positives = 198/253 (78%) Query: 316 GDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSAR 375 GDLT ++ + +E Q+ ++ + ++ + VRR ++T+ ++S EIA+GN DLS+R Sbjct: 230 GDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSR 289 Query: 376 TEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAI 435 TE QAG+LEETAS+ME+LTSTV+QN++NAR+AN+L +A+++A KGG VV VV TM +I Sbjct: 290 TEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSI 349 Query: 436 NASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAA 495 SSR+I DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 350 KDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAA 409 Query: 496 KEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVN 555 KEIK LID SV KV G LV QAG TM++IV+S++ V+ I+SEI AS EQ+ GI++VN Sbjct: 410 KEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVN 469 Query: 556 LAITHIDEGTQQN 568 AI+ +DE TQQN Sbjct: 470 QAISQMDEMTQQN 482 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 283 bits (723), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 169/283 (59%), Positives = 219/283 (77%) Query: 316 GDLTLRLAEDGQDEVTQISRSFNKFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSAR 375 GDL R+ + DE Q+ ++ + + + +VR +T+ +S +IA GN DLS+R Sbjct: 233 GDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSR 292 Query: 376 TEQQAGALEETASAMEQLTSTVQQNSENARRANELAGNASQIAAKGGEVVGNVVSTMEAI 435 TE+QA +LEETAS+ME+LTSTV+QN++NAR+AN+LA +AS +A KGG VV VV TME I Sbjct: 293 TEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDI 352 Query: 436 NASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAA 495 N+S+++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 353 NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAA 412 Query: 496 KEIKVLIDTSVSKVADGGVLVAQAGQTMEQIVSSIRDVSVIVSEIAHASGEQNGGIQEVN 555 KEIK LI SV KV G LVA+AG TME++V+S++ V+ I+SEI AS EQ+ GI++VN Sbjct: 413 KEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVN 472 Query: 556 LAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AI +D+ TQQNAALVE+AAAAA+SL ++A +L+ V FK+ Sbjct: 473 QAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 887,321 Number of extensions: 32440 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 15 Length of query: 598 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 511 Effective length of database: 713,682 Effective search space: 364691502 Effective search space used: 364691502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)