BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4425.p (587 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 474 e-135 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 456 e-129 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 428 e-121 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 408 e-115 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 400 e-113 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 474 bits (1220), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/589 (50%), Positives = 392/589 (66%), Gaps = 30/589 (5%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEVSD 60 M KN+KI VRL + F +L+ +M +T + L V+ +T ++++ +K L + Sbjct: 1 MQFKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATV-LMEEATIKERLAQQWIK 59 Query: 61 NVNSAARNLRNALLARNVE-ESNKYLSAGLANSSRTV-EALGKLEKLINTPKGKEMFAAL 118 + + +R R + E +K L ++ S V + +LE L+ + +GK++ A + Sbjct: 60 GIET--NTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATV 117 Query: 119 IAVRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDASV 178 R Y+ RD + L +E + E + + ++ P D Y ++ V+ Q + + + Sbjct: 118 AEKRATYTAIRDDVMNL-REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAK 176 Query: 179 AQGKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIG 238 + I SA L++ L +A+ L + AW++TRSIT+PL+ AV VA VA GDLT +I Sbjct: 177 GRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRIT 236 Query: 239 QTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGAL 298 SKDETG LL +LK MN+SL +++VRSG DTI TAS++IA+GNLDLSSRTEEQA +L Sbjct: 237 VDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSL 296 Query: 299 EETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIV 358 EETAS+MEELTSTVKQNADNARQANQLA TAS VA +GG+VV +VV TM IN +++KIV Sbjct: 297 EETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIV 356 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALID 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LID Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 416 Query: 419 DSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQ 478 DSV +VD GS+LV +AG+TM EVV SVKRVTD++AEI AAS EQS GIEQ+N AI QMDQ Sbjct: 417 DSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQ 476 Query: 479 VTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPAPTPA 538 VTQQNAALVEEAAAAA+SL EQ++ L VS+FKL G A ++R T P A Sbjct: 477 VTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD----GVANSSR----VATRLPVAA 528 Query: 539 PHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGDWEQF 587 + P A + PAPK + + ++PV+ D DWE+F Sbjct: 529 SNAP---ATRQFAASPAPKKIANE------------TRPVSGD-DWEEF 561 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust. Identities = 294/594 (49%), Positives = 393/594 (66%), Gaps = 26/594 (4%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRY-VKISLVNEVS 59 M + N+KI RL + F +++ ++ + T + L ++ ++ +VDD ++ S N + Sbjct: 1 MRIANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLL 60 Query: 60 DNVNSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGK-LEKLINTPKGKEMFAAL 118 +A+R L AL+ + ES ++ + S+ + + K +E IN+ K KE+FA + Sbjct: 61 GTSVNASRTL--ALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEV 118 Query: 119 IAVRNAYSGPRDKLRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKS---LMD 175 R+AY R + + EA + +++P D Y + + + ++ L D Sbjct: 119 AKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLAD 178 Query: 176 ASVAQGKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTV 235 S+ + S + L++ + IAI+L L AW +T ITRPL+EA+KVA +VAEGDLT Sbjct: 179 ESITD--DYLSGRMALIIG-AVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTA 235 Query: 236 QIGQT-SKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQ 294 + ++DE G+LL++L M +L R V+++R GTDTI TASSEIA+GNLDLSSRTE+Q Sbjct: 236 RSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQ 295 Query: 295 AGALEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEAS 354 A +LEETAS+MEELTSTVKQNADN+RQANQLA AS VAV+GG+VV QVV TMG IN ++ Sbjct: 296 ASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSA 355 Query: 355 KKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK 414 KKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AAKEIK Sbjct: 356 KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIK 415 Query: 415 ALIDDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAIT 474 LI DSV +VD GS+LV +AG+TM E+V VKRV D++AEI+AAS EQSDGIEQ+N A++ Sbjct: 416 TLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVS 475 Query: 475 QMDQVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPKPTPA 534 QMDQVTQQNAALVEEAAAAA+SLQ+Q+ L VSVF++ S A AA P Sbjct: 476 QMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAA------PRTV 529 Query: 535 PTPAPHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDG-DWEQF 587 + A HKP+ A P K+ + + + A KPVA G DWE+F Sbjct: 530 QSTAMHKPLAA--------PVKKSSSSSSLTVTESKKVAAPKPVAAGGDDWEEF 575 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 297/593 (50%), Positives = 384/593 (64%), Gaps = 34/593 (5%) Query: 1 MNVKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDD-RYVKISLVNEVS 59 M + N+KI VRL + FA+++ +M + + L V+ +T ++ + ++S+ Sbjct: 1 MKITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAG 60 Query: 60 DNVNSAARNLRNALLARNVEESNKYLSAGLANSSRTVEALGKLEKLINTPKGKEMFAALI 119 ++ N+ R + + N E ++ + A S + KLE LI++ +GK++ +A+ Sbjct: 61 NSANAIRTTAR--IRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVG 118 Query: 120 AVRNAYSGPRDKLRELIKEQK---KDEAIDYLFKEVIPRQDEYFAVLDKFVDYQKSLMDA 176 R Y R ++ +L + ++EA + ++ P + Y + VD+Q+ Sbjct: 119 DKRTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLE 178 Query: 177 SVAQGKEISSSAVTLMLALSTIAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQ 236 + + + +S +L L IA+ L AL AWL++RSITRPL AV+VA VA GDL + Sbjct: 179 AKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNR 238 Query: 237 IGQTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAG 296 I S DETG LL +L+ MN+ L + VSEVR+G +TI TAS++IA GNLDLSSRTEEQA Sbjct: 239 IEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQAS 298 Query: 297 ALEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKK 356 +LEETAS+MEELTSTVKQNADNARQANQLA +AS VA +GG VV QVV TM +IN ++KK Sbjct: 299 SLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKK 358 Query: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKAL 416 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK L Sbjct: 359 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTL 418 Query: 417 IDDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQM 476 I DSV +VD GS+LV +AG TM EVV SVKRVTD+++EI AAS EQS GIEQ+N AI QM Sbjct: 419 IGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQM 478 Query: 477 DQVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKPVPK-PTPAP 535 DQVTQQNAALVEEAAAAA+SL EQ+ +L VSVFKL + + A K V K A Sbjct: 479 DQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL--DGVAASTPATKTVRKIAAAAS 536 Query: 536 TPAPHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGD-WEQF 587 AP K +AAP PV +PKA A GD WE+F Sbjct: 537 HHAPAKRAIAAPTPV----SPKA--------------------ATGGDEWEEF 565 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 238/395 (60%), Positives = 293/395 (74%), Gaps = 24/395 (6%) Query: 198 IAIVLCALAAWLVTRSITRPLNEAVKVASAVAEGDLTVQIGQTSKDETGMLLASLKTMNE 257 ++L A+ + R I RPL++AV++A +VA GDLT QI S +ETG LL +LK MN+ Sbjct: 197 FGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMND 256 Query: 258 SLHRIVSEVRSGTDTINTASSEIATGNLDLSSRTEEQAGALEETASAMEELTSTVKQNAD 317 SL + VS VR GT+TI AS EIA+GN DLSSRTE QAG+LEETAS+MEELTSTV+QNAD Sbjct: 257 SLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNAD 316 Query: 318 NARQANQLAATASEVAVQGGSVVGQVVQTMGEINEASKKIVDIISVIDGIAFQTNILALN 377 NARQANQL +A+EVAV+GGSVV +VV TMG I ++S+KIVDII VID IAFQTNILALN Sbjct: 317 NARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALN 376 Query: 378 AAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVTRVDNGSRLVEQAGST 437 AAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIKALIDDSV +VD GS+LV+QAGST Sbjct: 377 AAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGST 436 Query: 438 MGEVVASVKRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVEEAAAAAQSL 497 M E+V SVK V D+++EI++AS EQSDGIEQ+N AI+QMD++TQQNAALVE+AAAAAQS+ Sbjct: 437 MQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSM 496 Query: 498 QEQSSRLTATVSVFKLSSNDAGRAQAA--RKPVPKPTPAPTPAPHKPVVAAPKPVPTVPA 555 Q+Q+ L+ V++FKL + + + +A R+ P A + + AAP Sbjct: 497 QDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQAANPATTSRALTAAPH------- 549 Query: 556 PKALPAKPAAASATSAKAGSKPVADD---GDWEQF 587 K L KP KP++ D DWE+F Sbjct: 550 -KQLETKP-----------QKPISADKSGDDWEEF 572 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 400 bits (1029), Expect = e-113, Method: Compositional matrix adjust. Identities = 278/600 (46%), Positives = 364/600 (60%), Gaps = 62/600 (10%) Query: 3 VKNVKISVRLAVCFAILIAVMCLITGTAMKSLSGVSHSTSQIVDDRYVKISLVNEV--SD 60 +KN+ I RL + + M LI G AM L GV +T+ + + YV N++ S+ Sbjct: 2 LKNISIKFRLLLTMVFM--GMMLIVGGAMGIL-GV-QTTNNTLQNIYV-----NQMPSSE 52 Query: 61 NVNSAARNLRNALLARNV-------EESNKYLSAGLANSSRTVEALGKLEKL-INTPKGK 112 ++S L A N+ E S + L ++ E K L I T + + Sbjct: 53 AIHSMMTRLLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEER 112 Query: 113 EMFAALIAVRNAYSGPRDK-LRELIKEQKKDEAIDYLFKEVIPRQDEYFAVLDKFVDYQK 171 ++ + A R Y ++ L ++ + +E D L ++ P F L K D Sbjct: 113 KVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPP----LFQSLTKSTDELV 168 Query: 172 SLMDASVAQGKEISSSAVTLMLALSTIAIVL----CALAAWLVTRSITRPLNEAVKVASA 227 L S A G + S + ++ + ++L A+ A+ + R+IT PL E + Sbjct: 169 ELQMKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDT 228 Query: 228 VAEGDLTVQIGQTSKDETGMLLASLKTMNESLHRIVSEVRSGTDTINTASSEIATGNLDL 287 +A GDLT I S++E G L+ L+ M + L V++VR G+ I+TA++EIA GNLDL Sbjct: 229 IASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDL 288 Query: 288 SSRTEEQAGALEETASAMEELTSTVKQNADNARQANQLAATASEVAVQGGSVVGQVVQTM 347 SSRTE+QA +LEETAS+MEELTSTVKQN DNARQANQLA +AS VAV+GG+VV VV TM Sbjct: 289 SSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTM 348 Query: 348 GEINEASKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA 407 IN +++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 349 DAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 408 Query: 408 SAAKEIKALIDDSVTRVDNGSRLVEQAGSTMGEVVASVKRVTDVVAEISAASNEQSDGIE 467 +AAKEIK LIDDSV +VD G+RLV +AG+TM EVV SVKRVTD+++EI AAS EQS GIE Sbjct: 409 AAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIE 468 Query: 468 QINHAITQMDQVTQQNAALVEEAAAAAQSLQEQSSRLTATVSVFKLSSNDAGRAQAARKP 527 Q+N AI QMD+VTQQNAALVE+AAAAA SL++Q++ L+ VSVFKL G A + Sbjct: 469 QVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ----GHQSAPQNL 524 Query: 528 VPKPTPAPTPAPHKPVVAAPKPVPTVPAPKALPAKPAAASATSAKAGSKPVADDGDWEQF 587 VP+ PKAL ++PAA + T +DGDWEQF Sbjct: 525 VPQAR-----------------------PKALESRPAAIAHTGK-------GNDGDWEQF 554 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.310 0.123 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 670,156 Number of extensions: 19909 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 15 Length of query: 587 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 500 Effective length of database: 713,682 Effective search space: 356841000 Effective search space used: 356841000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)