BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4424.p (485 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 266 2e-72 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 204 1e-53 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 165 5e-42 gi|134093340|ref|YP_001098415.1| putative two-component sensor h... 104 1e-23 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 102 3e-23 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 266 bits (680), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 172/483 (35%), Positives = 277/483 (57%), Gaps = 34/483 (7%) Query: 10 NLRSQLVRWLLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVT 69 +L +++ W+L+PL LL L Y A +A+ +DR+L +A++V V+G+V Sbjct: 32 SLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGQVV 91 Query: 70 ADVPYVALDSFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFYQAD 129 + A+D D + IYY++ V G ++P +P + + S + R+ D Sbjct: 92 TRLTGPAIDILHADDIDNIYYQIRDAHDTFVEGDPEMP-LPKDAEESAPWSTKFRY---D 147 Query: 130 Y-HQQPIRIAALLQPVYDDSMRG-------IALIQVGETMEGRNGMTRKILFDTLWRQGT 181 + H +RIA + ++ + +AL+QVGET++ R+ + +I+ + + Sbjct: 148 FIHNTEVRIAYIYVDLHKTQVEPQLSIEPRMALVQVGETLDKRSQLVNQIIKGVIVPEFI 207 Query: 182 LVTVAALLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGR 241 ++ +A +LVWFA+ LRP+ +L+ + +R P DLS D V +E+ PLV ++N + R Sbjct: 208 ILPIALILVWFALTRGLRPLAELQQRIRARRPDDLSPIDSGHVPEEIIPLVGSLNDMLER 267 Query: 242 LQALISGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDA 301 L I Q+RFIADA+HQ++TPL ++ QSEL LR+ D AE+ + ++ +A+++ + Sbjct: 268 LSQSIKVQKRFIADAAHQMKTPLAGMRMQSELALRQ-----TDHAEIHKSLEQLAKSSKS 322 Query: 302 AVHLANRLLTLARAEHGAAEGGTRPV---SLTDAARQVALELSQQAVAREINLGFEEEGD 358 A + N+LL LARAE+ + T+P+ L++ AR Q + R+I+LGFE+ + Sbjct: 323 ATRMVNQLLALARAENQTPQ--TKPMQVLELSELARDTVQNWVQTSFNRKIDLGFEQPDE 380 Query: 359 -IAIDANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIA 417 + +A +LHEL+ NL+DNA+ YTP+GG T+RVR G A LEVEDNGPGIA Sbjct: 381 AVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVRTDQQAG---LAFLEVEDNGPGIA 437 Query: 418 PAERARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASVT-LDTPALGS----GLL 472 P ER+ +FE FYR + N G+GLGL+IVREIA H+A + L+ P G L Sbjct: 438 PHERSHIFERFYRILGS---NVEGSGLGLAIVREIALQHNAEIEILNNPRCQGQKRPGCL 494 Query: 473 VRI 475 +R+ Sbjct: 495 MRV 497 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 156/461 (33%), Positives = 238/461 (51%), Gaps = 22/461 (4%) Query: 19 LLIPLTLLVALDAVSVYYNALEVADLAYDRSLLASTRALAERVSIVDGRVTADVPYVALD 78 +L+PL+L++ +D V Y+ VA+ YD L R + V+ G + D+ A Sbjct: 1 MLVPLSLILLIDIVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAER 60 Query: 79 SFETDTLGRIYYKVTGLDGELVSGYDDLPPVPANVKRSQAYPALVRFYQADYHQQPIRIA 138 + D ++YY + +DG L++G D PV +K + +Y Q +R+A Sbjct: 61 TLLLDKEDQVYYAIRTMDGNLIAG-DPTLPVQTVIKSGKD----TAYYDGVLQGQSVRVA 115 Query: 139 ALL-QPVYDDSMRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFV 197 L QP+ + + +IQV ET RN R +L + Q L+ +A +L+W V Sbjct: 116 LLRGQPLLHPATEPV-MIQVAETQVKRNRHERALLIQLILPQVLLILIAGILIWRGVAHG 174 Query: 198 LRPVMQLKGEVESRAPTDLSGFDPALVHKEMRPLVLAMNGYMGRLQALISGQRRFIADAS 257 L P+ +L+ EV R+ DLS V E+ PLV A+N M R+ A++ Q RFIAD + Sbjct: 175 LAPLRKLQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIADTA 234 Query: 258 HQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLANRLLTLARAEH 317 HQLRTP+ LK EL LRE D +++ + + + + L ++LL+LAR E Sbjct: 235 HQLRTPVAGLKAHIELALRE-----NDLTQVKRALGHLYTSAERLSRLVSQLLSLARNEP 289 Query: 318 GAAEGGTRPVSLTDAARQVALELSQQAVAREINLGFEEEGD-IAIDANALLLHELMVNLL 376 P L A + A E A ++I+LGF+ G + ++ A + E++ NL+ Sbjct: 290 NNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNLV 349 Query: 377 DNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFEPFYRASATQH 436 DNAIRYTP GG+VT+ VR Q A L V D+G I ER R+FE F+R + Sbjct: 350 DNAIRYTPPGGRVTVHVR------QDEHAHLIVSDDGARIPVEERTRIFERFHRLLGSHE 403 Query: 437 VNPGGTGLGLSIVREIAAMHHASVTLDTPALGSGLLVRIAF 477 G+GLGL+IV EIA +H+A++TL+ G G ++F Sbjct: 404 ---EGSGLGLAIVHEIATLHNATITLEDDVDGVGNTFTVSF 441 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 165 bits (417), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 115/329 (34%), Positives = 169/329 (51%), Gaps = 16/329 (4%) Query: 154 LIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPVMQLKGEVESRAP 213 +IQV + RN M + +L ++ V AL +W V L P+ L + R+ Sbjct: 86 IIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFIWIVVGRSLYPLHHLARAIGRRSS 145 Query: 214 TDLSGFDPALVHKEMRPLVLAMNGYMGRLQALISGQRRFIADASHQLRTPLTVLKTQSEL 273 L E++P++ A+N + RL + QR F+ADA+H+LRTPLT LK Q +L Sbjct: 146 NALEPLPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADAAHELRTPLTALKLQLQL 205 Query: 274 TLRELRREHLDAAELRELVQGMARTTDAAVHLANRLLTLARAEHGAAEGGTRPVSLTDAA 333 RE + A R+L + + R T HL +LLTLAR E+ A+ ++ + L Sbjct: 206 VERE-NDDRQRATGFRKLHERLNRAT----HLVQQLLTLARHEYRIADRSSQKIDLRQLT 260 Query: 334 RQVALELSQQAVAREINLGFEEEGDIAIDA-----NALLLHELMVNLLDNAIRYTPSGGQ 388 +V + + QA + ++LG D DA N L L+ NL+DNA+RYTPS G+ Sbjct: 261 ARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLGNLVDNAVRYTPSHGR 320 Query: 389 VTLRVRATSAPGQPTCALLEVEDNGPGIAPAERARVFEPFYRASATQHVNPGGTGLGLSI 448 V + V ++A LL V+DNGPGI ++ RVF+ FYR T G+GLGL I Sbjct: 321 VDVTVNTSTADH---TVLLRVKDNGPGIPVQDQERVFDRFYRRDGT---GESGSGLGLFI 374 Query: 449 VREIAAMHHASVTLDTPALGSGLLVRIAF 477 + IA H A++ L T GL+V + F Sbjct: 375 AKTIATQHEATIELSTADSKGGLIVTVRF 403 >gi|134093340|ref|YP_001098415.1| putative two-component sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 428 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/295 (34%), Positives = 149/295 (50%), Gaps = 36/295 (12%) Query: 181 TLVTVAALLVWFAVRFVLRPVMQLKGEVE-SRAPTDLSGFDPALV-HKEMRPLVLAMNGY 238 T + +A L + + ++ PV +L VE + APT L P+L E+ L A Sbjct: 136 TSMLLAIALGLVSAKRIIAPVTELAAAVERNDAPTML----PSLTTQNEIGMLARAFAKR 191 Query: 239 MGRLQALISGQRRFIADASHQLRTPLTVLKTQSELTLRELRR---EHLDAAELRELVQGM 295 +LQ ++ ++ F D SH+LRTPLT++ SEL L + E L A +R + Sbjct: 192 TDQLQQFLADEKLFTGDVSHELRTPLTIVLGASELLKVRLAQSPDELLIAERIRRVAAEA 251 Query: 296 ARTTDAAVHLANRLLTLARAEHGAAEGGTRPVSLTD-AARQVALELSQQAVA-REINLGF 353 + A + L+ TL GG++ +SLT AR++ E QQ +A + + + F Sbjct: 252 SERVSALLLLSQSPETL---------GGSQ-LSLTHLIAREI--ERCQQLLAGKPVQIQF 299 Query: 354 EEEGDIAIDANALLLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNG 413 +E GDI + A A L + NLL NA +YT G T+RV Q T L +EDNG Sbjct: 300 QESGDIRVYARAELAGIAIGNLLRNACQYTEEG---TVRV-------QLTAQQLTIEDNG 349 Query: 414 PGIAPAERARVFEPFYRASATQHVNPGGTGLGLSIVREIAAMHHASVTLDTPALG 468 PG+ RAR+FE F R S QHV G+GLGL+IV+ +A + TP+ G Sbjct: 350 PGVPENVRARLFERFVRGSNNQHV---GSGLGLAIVKRVADHLGWQIEYATPSGG 401 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 15/278 (5%) Query: 188 LLVWFAVRFVLRPVMQLKGEVESRAPTDLSGFDPA-LVHKEMRPLVLAMNGYMGRLQALI 246 +L W+A R L P+ + ++ +++ P V EM L + +N + RLQ I Sbjct: 174 MLGWWAARQGLSPLRTMAARAQTVTSQNMNERMPVDAVPTEMTDLAVKLNAMLDRLQNDI 233 Query: 247 SGQRRFIADASHQLRTPLTVLKTQSELTLRELRREHLDAAELRELVQGMARTTDAAVHLA 306 + F AD +H+LRTP++ + TQ+ + L + R A+ R+ + A + Sbjct: 234 ARLTEFSADLAHELRTPISNMLTQTHVVLNQSR----STADYRDSLSSNAEELQRLGNTI 289 Query: 307 NRLLTLARAEHGAAEGGTRPVSLTDAARQVALELSQQAVAREINLGFEEEGDIAIDANAL 366 + +L LA+ E+G A +++ Q LE +A+A E + EGD + + L Sbjct: 290 SDMLFLAQTENGLALPSVAKLNMAREC-QALLEF-YEALAEEKKVVLRCEGDAVVIGDQL 347 Query: 367 LLHELMVNLLDNAIRYTPSGGQVTLRVRATSAPGQPTCALLEVEDNGPGIAPAE-RARVF 425 + + NLL NAIRYTPS G +++++ TSA T + V+++G I PAE + +F Sbjct: 348 MFRRALNNLLSNAIRYTPSYGTISIKI--TSAESGTT---ITVQNDGEEI-PAEIQPHLF 401 Query: 426 EPFYRASATQHVNPGGT-GLGLSIVREIAAMHHASVTL 462 + F+RA ++ + + GLGLSI R I H SV++ Sbjct: 402 DRFFRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSV 439 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 902,208 Number of extensions: 37763 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 20 Length of query: 485 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 400 Effective length of database: 720,272 Effective search space: 288108800 Effective search space used: 288108800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)