BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4423.p (224 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095857|ref|YP_001100932.1| two-component regulatory system... 204 3e-54 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 201 3e-53 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 166 8e-43 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 147 3e-37 gi|134093856|ref|YP_001098931.1| two-component system response r... 136 7e-34 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 204 bits (519), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 148/224 (66%), Gaps = 3/224 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRIL+VED L+ L +A+ A V+ A NG DA+ L YALV+LD+ LP+MDGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 VL+R+R R SR PVLILTAR L DRV+GL++GADDY+ KPF+L E EARV+AL+RR Q Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 ++ G L FD + + + L+ RE AV E L+ RQG V K+++ ++F Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQAA 224 D+ +AIE+Y+HR+RKKLE P + I T+RG+GYLL+ + Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLE---PYNITIRTVRGMGYLLEKS 221 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 201 bits (510), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 144/222 (64%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRILL ED L+ L +++R + +C NG +ADS L TQD+ L+ILDL LP+M GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR SR PVLILTA + RV GL++GADD++AKPF L ELEARV+AL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 SQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFS 180 + G L++D V R ++L L+ RE +LE L+ R G V K++L + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 LDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 + S +AIE+Y+HRLRKK+E G + I T+RGLGY L+ Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGG---LRIATVRGLGYCLE 219 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 166 bits (420), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 138/223 (61%), Gaps = 2/223 (0%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 M++L+VED ++ +L + + +A V+ A+NG D L +T +Y L+ILD+ LP +DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 EVLKRMRARGSRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 ++L+ +R G+ P L LTAR G+ADRV GL +GADDY+ KPF EL ARV+ LLRR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 121 SQEAVT-VACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVF 179 V + L D R T G+ L LT +E +LE L+ +G +P+ + Q++ Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 SLDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQ 222 ++ N+ + I++ I RLR K++ D ++ I+T+RG+GY+L+ Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKL-ISTIRGVGYVLE 222 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 147 bits (372), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 122/201 (60%), Gaps = 2/201 (0%) Query: 22 DAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGLEVLKRMRARGSRTPVLILTAR 81 +A V+ A NG D + + + Y LV+LD+ LP +DG ++K +R G + PVL LTAR Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 82 GGLADRVSGLNMGADDYLAKPFELEELEARVKALLRR-SQSQEAVTVACGALNFDTVSRT 140 GG+ DRV GL +GADDYL KPF EL ARV+ LLRR S ++ + L D R Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 141 FTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQVFSLDDNASVDAIEIYIHRLRKK 200 T G+ + LT +E ++LE L RQG +P+ + QV+ ++ ++ +AI++ I RLR K Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 201 LEHDGPGRVGITTLRGLGYLL 221 ++ ++ I T+RG+GY L Sbjct: 182 IDDPFEPKL-IHTVRGMGYTL 201 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 136 bits (343), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGL 60 MRIL++ED ++ +L + + ++ TV A NG D + + L++LD+ LP + G Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 EVLKRMRARGSR--TPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRR 118 E+L +R++ + PV+ LTARG + DRV GL +GADDYL KPF EL AR++ LLRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 119 SQSQEAVTVACGALNFDTVSRTFTYGGELLALTPREHAVLEALIMRQGHTVPKDKLFQQV 178 S ++ + G + D + R G+ + LT +E +L L RQ + + + QV Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 179 FSLDDNASVDAIEIYIHRLRKKLEHDGPGRVGITTLRGLGYLLQA 223 + ++ + + I+ + RLR K++ ++ I T RG+GY+ + Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKL-IHTQRGMGYVCEV 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 418,785 Number of extensions: 16287 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 26 Length of query: 224 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 146 Effective length of database: 743,337 Effective search space: 108527202 Effective search space used: 108527202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)