BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4422.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093626|ref|YP_001098701.1| hypothetical protein HEAR0348 [...    76   3e-15
gi|134095892|ref|YP_001100967.1| hypothetical protein HEAR2726 [...    69   3e-13

>gi|134093626|ref|YP_001098701.1| hypothetical protein HEAR0348
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 129/305 (42%), Gaps = 16/305 (5%)

Query: 29  LECIVPAKPGGGMDASCKLLRRVM-QEQGQHEAFKLAYLPGGIGAVAWSSVVSHRRGGPQ 87
           +E +VPA  GGG D   +L++ V+ + +   E   +    GG GA  +  V   +    +
Sbjct: 41  VEFVVPAGTGGGADQMARLIQGVIIKNKLMKEPLIVVNRSGGAGAEGFLDVKGSKGDPHK 100

Query: 88  TLVAFSGGSLLGLAQG-KYGRAEVGDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRK 146
            ++  S      +A G  +   E+  V   A + +D  ++   ++ P++  K+ ++A++ 
Sbjct: 101 IIITLSNLFTTPMATGVPFNWKEMTPV---AMLALDQFVLWTNAEKPYKTAKEYIDAVKA 157

Query: 147 DPTNTTIGLSGTVGSQDWLKMAMLVERAGMNARQFHFVALEGGGDSFAALQAGHVQVISG 206
              N    + GT   Q+   +   +E+A     +F ++  +GGG+    L   H+     
Sbjct: 158 AGPNK-FKMGGTGSKQEDQIITAGLEKA--TGTKFIYIPYKGGGEVAVQLVGNHIDSTVN 214

Query: 207 DASEAAYFIAEGKVRILAVLSEKRLPGPLQ--------DVPTAREQGYDVVWPIIRGFYM 258
           +  EA      GK++ L V  ++R+P   +        D+PT +E G    + ++RG +M
Sbjct: 215 NPIEAVSQWRAGKLKALCVFDDQRMPYKAKITETQSWNDIPTCKEAGIPTDYTMLRGIFM 274

Query: 259 SPHTSDADYRRWVQYFEQALADPEFDRQRSIGGLQAFAMTGKPLSEYIAQTVARYRKQSQ 318
            P+ +      +V  F +  A  E+      G       TG     ++     ++    Q
Sbjct: 275 PPNVTADQLAYYVDLFTKVRATAEWKDYMEKGAFNTSFKTGNDFKTWLEAAEKQHATLMQ 334

Query: 319 ELGLV 323
           E G +
Sbjct: 335 EAGFM 339


>gi|134095892|ref|YP_001100967.1| hypothetical protein HEAR2726
           [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 12/220 (5%)

Query: 112 DVRWVAGIGIDHGMIAVRSDAPWRNLKQLLEAIRKDPTNTTIGLSGTVGSQDWLKMAMLV 171
           D+  +A I  D  +    ++A ++     L A+++ P   T  + GT   ++   + M++
Sbjct: 115 DLTPIAVIAQDAFVFWTNTEAGYKTPTDYLAAVKQKPD--TFKMGGTSSKREDHMITMMI 172

Query: 172 ERAGMNARQFHFVALEGGGDSFAALQAGHVQVISGDASEAAYFIAEGKVRILAVLSEKRL 231
           E+      +F ++  +GGG++   L   H+   + + SE+      G+ + L   S KR+
Sbjct: 173 EKK--TGTKFLYIPYKGGGEAATQLSGKHIDSNTNNPSESVSQWRAGQHQALCAFSNKRI 230

Query: 232 PGPLQ--------DVPTAREQGYDVVWPIIRGFYMSPHTSDADYRRWVQYFEQALADPEF 283
               +        D+PT +E+G DV + +IR F M         + +V   ++    PE+
Sbjct: 231 AYTAKVTATQAWSDIPTCKEKGLDVSYEMIRIFMMPGGVKPEQAQFYVDLLKKVTETPEW 290

Query: 284 DRQRSIGGLQAFAMTGKPLSEYIAQTVARYRKQSQELGLV 323
                   LQA  M+G  L+ ++A+    +R+  ++ G +
Sbjct: 291 KAYLEKNALQADFMSGTTLTTFLAKDEQLHREIMKDAGFL 330


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 649,072
Number of extensions: 28036
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)