BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4420.p (603 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem... 68 1e-12 gi|134094056|ref|YP_001099131.1| iron ABC transporter membrane p... 67 3e-12 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 66 4e-12 gi|134096010|ref|YP_001101085.1| spermidine/putrescine ABC trans... 58 1e-09 >gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 281 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 29/279 (10%) Query: 1 MQTTTTLARSEQALPARRFRLNWPRGLVVLLTALAIFVPL--LLIFYQSFLSAPFFAPVK 58 M ++ R+ LP F +++ G VL +L I +P+ LL++ V Sbjct: 1 MNSSLRFFRNTPILPG--FSISF--GFSVLYISLVILLPISALLVY------------VS 44 Query: 59 ELTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPAL 118 ++FD Y F D Q++ L A +I +G +LA+++ R D PGR LI + Sbjct: 45 GMSFDQYWFAITDARVLQSYKVTLMGAFYSTVIVTFIGFLLAWIITRYDFPGRRLIDSLV 104 Query: 119 MVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHV 178 +P + V G V P G W+ +FG + Y+F IV+ T + Sbjct: 105 DLPFALPTSVAGVTLSVLFMPTG----WLGQWFDIFGIKIS----YAFPGIVVAMIFTSL 156 Query: 179 PHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVF 238 P + L+ + +++EEAA + GA+ Q+ V LP + PAL F F Sbjct: 157 PFIVRSVQPVLEDMENELEEAALMLGANKWQIFWRVILPTLIPALITGSSQAFIRSLGEF 216 Query: 239 GLVLVLGDPEGHLVLPTYLYKLTNKLGTPSYHLMAAVAV 277 G V+++ G++ T + L + Y+ AA A+ Sbjct: 217 GAVIMIA---GNIPFQTEVTSLMLFVRLQEYNYPAAAAI 252 >gi|134094056|ref|YP_001099131.1| iron ABC transporter membrane protein permease [Herminiimonas arsenicoxydans] Length = 552 Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 120/483 (24%), Positives = 202/483 (41%), Gaps = 66/483 (13%) Query: 76 QAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPALMVPIFVSPMVIGFGYVV 135 + +N +A +A++ +G A+L+ D PG+ AL++P+ + V+ + Y Sbjct: 65 EYIVNSAIIAVIVAVLTATIGIGCAWLVAVFDFPGKKFFEWALILPLAMPAYVVAYAYTD 124 Query: 136 SM---GPVGFYTVWVKNLLSVFGFEG-DPW--NIYSFTSIVIIAGLTHVPHVYLYASAAL 189 + GP+ L + FG++G D W I S ++ L P+VYL A Sbjct: 125 FLQFTGPLQ------TGLRTQFGWQGGDYWFPQIRSVGGAGLLFALVLYPYVYLLVRNAF 178 Query: 190 KSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGLVLVLGDPEG 249 + +AAR GA P Q L VSLP+ PA A L +G V G P Sbjct: 179 IERSPRMWDAARTLGAGPWQAFLQVSLPLARPAAAAGIALALMETLADYGAVAYFGVP-- 236 Query: 250 HLVLPTYLYK----LTNKLGTPSYHLMAAVAVCLVAVTMPLVMLQRWLLRSANKYVAIKG 305 L T +YK +++ A +A L+ V M L++L++ R +Y A+ G Sbjct: 237 --TLTTGIYKSWYIFSDRTAA------AQIAAVLLMVVMGLMLLEQ-KSRGRARYYAVGG 287 Query: 306 KGARQKALPL-GKWRWVAFTLIAGWLLFTVVIPLSGIGLRTFVSHWGDGVSLLEVLTFEN 364 + Q A L G+ W A A +LF +PL + + L+F Sbjct: 288 RSTAQAATVLTGRHAWGASLFCALPVLFGFFVPLIILLRLLLNE---------DALSFGT 338 Query: 365 LLNVWDQPSLVRGIINTVLIGVIGGALAVACYTAIALAMHRKQDGVTRFLDYSVLVPRAV 424 W + ++V G I T LI V+ + V A + R Q R + +P AV Sbjct: 339 RYIGWLENTIVLGGI-TALIAVV---ICVLMAYAARVTKSRAQAICNRIVSMGYAIPGAV 394 Query: 425 --PGLLAGLSFLWVFLFVPSLLDSALKGIDNPIALWLVESFIPALRGLRSTIFSVWLAYS 482 G+L LS+ I W E I + L ++ ++ AY Sbjct: 395 IAVGILIPLSY---------------------IDAWNSEHGIALV--LSGSVVALVYAYL 431 Query: 483 VVWMAYGLRLINTALLQVGPELEEAARAVGASRSRVTRDVTIPLVRYGLVGAWLMVFLIF 542 V ++A + + L ++ P ++ +AR++G + R + +PL+ ++ A L+VF+ Sbjct: 432 VRFLAVSFQSVQAGLTKITPAMDASARSLGHGIGSMLRHIHVPLLWRSVLTAGLLVFVDV 491 Query: 543 ERE 545 +E Sbjct: 492 VKE 494 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 28/244 (11%) Query: 26 GLVVLLTALAIFVPLLLIFYQSFLSAPFFAPVKELTFDSYRFIFDDPDFRQAFINGLTLA 85 GL ++LT L + VPL+LIF Q+F + R + + A GLTL Sbjct: 18 GLGIVLTILMLIVPLILIFTQAFSGG----------VELLRQNLSEDYMQHAL--GLTLL 65 Query: 86 TGLALIAVPL----GGMLAFLMVRTDLPGRSLIAPALMVPIFVSPMVIGFGYVVSMGPVG 141 A++ VP+ G +LA+ + D GR L+ + +P SP+V GF Y+V G G Sbjct: 66 A--AVLTVPINLVFGILLAWCVTHYDFFGRRLLITLVEIPYATSPVVAGFCYLVVYGLEG 123 Query: 142 FYTVWVKNLLSVFGFEGDPWNIYSFTSIVIIAGLTHVPHVYLYASAALKSLGSDVEEAAR 201 W+ +E D ++++ I+++ P++ ++ G++ E AA Sbjct: 124 VIGQWL--------YEKDVQLMFAWPGIIMVTVFVTAPYIARILMPLMQKQGTEEEIAAL 175 Query: 202 VAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEVFGLVLVLGDP--EGHLVLPTYLYK 259 GA+ Q+ +V+LP I AL Y V+ FG V V+ L LP + + Sbjct: 176 SLGATGWQIFRHVTLPNIKWALLYGAVITNARAVGEFGAVAVVSGTIMNQTLTLPLLVEQ 235 Query: 260 LTNK 263 L N Sbjct: 236 LNND 239 >gi|134096010|ref|YP_001101085.1| spermidine/putrescine ABC transporter inner membrane protein [Herminiimonas arsenicoxydans] Length = 312 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 3/195 (1%) Query: 59 ELTFDSYRFIFDDPDFRQAFINGLTLATGLALIAVPLGGMLAFLMVRTDLPGRSLIAPAL 118 +LT +S+ F D + F+ L A L+ + + LA L+ R+ RSL+ + Sbjct: 73 DLTLESFAPFFSDFVYTAIFLKSLLFAVITTLVCLLMAYPLALLIARSPQKWRSLLVLLV 132 Query: 119 MVPIFVSPMVIGFGYVVSMGPVGFYTVWVKNLLSVFGFEGDPWN-IYSFTSIVIIAGLTH 177 ++P + + ++ + +++ +GP T V LL VFGFE P + +YS +++I H Sbjct: 133 ILPFWSNFLIRIYAWMIILGPQSALTRGVNMLLGVFGFE--PVSLLYSAFAVIIGLVYVH 190 Query: 178 VPHVYLYASAALKSLGSDVEEAARVAGASPLQVALNVSLPMITPALAYSGVLVFFLGFEV 237 +P + L A L+ + +AA+ GA Q V+ P+ P + LVF + Sbjct: 191 LPFMVLPLYANLEKHDPALLDAAQDLGAGAWQRFWRVTFPLSLPGVYAGAALVFIPALGI 250 Query: 238 FGLVLVLGDPEGHLV 252 F L +LG G ++ Sbjct: 251 FALSDILGGTGGIMI 265 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,096,328 Number of extensions: 44437 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 9 Length of query: 603 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 516 Effective length of database: 713,682 Effective search space: 368259912 Effective search space used: 368259912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)