BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4419.p (362 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 228 3e-61 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 210 9e-56 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 204 4e-54 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 141 6e-35 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 139 2e-34 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 228 bits (582), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 195/335 (58%), Gaps = 16/335 (4%) Query: 1 MTELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 M L + +L +G N ++ +S+ ++ GE LLGPSG GKTTLLR +AG + P Sbjct: 1 MALLEIRNLTRRFGD----NTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPD 56 Query: 61 AGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEI 120 AG I + DG +P E+R + VFQ+YAL+PH TVA N+A+ L++ TP +EI Sbjct: 57 AGKI------LLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEI 110 Query: 121 AKRVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 ++V E L + L RYPH+LSGGQ+QRV+IARALV P+++LLDEPLS LDA+LRE Sbjct: 111 KQKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLRE 170 Query: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFT 240 + + L L +G++ + VTHDQ EA+A+S RI ++N G IEQ P +Y P + F Sbjct: 171 QMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFV 230 Query: 241 AEFMGSNNKLAAEVLSREGERVTLKLDGGTAVATLRGRDDAKPGEQLTGIIRVEQVRISG 300 A+F+G+ N V G+ + L + G AV L + G + T +R E++++S Sbjct: 231 ADFIGTCNLFDGTVTQIAGDTMLLDVPGMGAVKALT-VAGVQVGSKGTIALRPEKIQVSA 289 Query: 301 EQT-----DNAIRLPLSTCMYLGDRWECLFKVEGG 330 E +N + +Y+G + + EGG Sbjct: 290 EIVGGVPDENHFDGYVKELLYMGGVTVYIVETEGG 324 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 210 bits (535), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 179/295 (60%), Gaps = 6/295 (2%) Query: 3 ELSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAG 62 LS+ + + Y G + I+ +S LQRG++ LLG SG GKTT+LRA+AG E G Sbjct: 14 HLSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEG 73 Query: 63 TIDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSAEIAK 122 +I +G + + + F E R +G+VFQ YAL+PH +VADNV +GL RK + E Sbjct: 74 SITLGGKEISNA--HFTATPETRQIGVVFQDYALFPHLSVADNVGFGL--RKLAAPERQA 129 Query: 123 RVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEA 182 R+ +L+ +GL G+++PH+LSGGQQQRVA+ARAL P ++LLDEP SNLD LRE Sbjct: 130 RIAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERL 189 Query: 183 RAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLFTAE 242 + +R+++ +G +A++VTHDQ EA AI+D+I ++ +G I Q + ++Y P F A+ Sbjct: 190 ASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVAD 249 Query: 243 FMGSNNKLAAEVLSREGERVTLKLDGGTAVATLRGRDDAKP-GEQLTGIIRVEQV 296 F+G ++ ++ + V ++L + D P G+Q+ ++R + V Sbjct: 250 FIGL-GVFTPGIIDQQTQNVNIELGSLPLCHGMETCDPNAPDGQQVDVLLRADDV 303 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 204 bits (520), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 109/249 (43%), Positives = 158/249 (63%), Gaps = 14/249 (5%) Query: 4 LSVNDLHLDYGTGASANPILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGT 63 + V +++ +G + N VS++ GE+ ALLGPSG GKTTLLR +AGLE P G Sbjct: 3 IEVKNINKKFGNFVALN----DVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 64 IDIGSRRVFDGARQFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKT---PSAEI 120 + + DG ER +G VFQ YAL+ H TV +N+A+GL++R PS + Sbjct: 59 V------LLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESV 112 Query: 121 AK-RVKEVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLR 179 K +V ++L + L L +RYP QLSGGQ+QR+A+ARAL P+V+LLDEP LDAK+R Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 180 EEARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQTPNTLF 239 +E R +LR L L ++++ VTHDQ EA+ ++D+I+L+N G +EQ G P+ +Y P + F Sbjct: 173 KELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPF 232 Query: 240 TAEFMGSNN 248 F+G+ N Sbjct: 233 VYGFLGNVN 241 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 141 bits (355), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 12/202 (5%) Query: 35 VVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGARQFEMPAEERNLGLVFQSY 94 + AL G SGSGKTT LR +AGLE +++ D A +P +R LG VFQ Sbjct: 32 ITALFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQRPLGYVFQEA 91 Query: 95 ALWPHKTVADNVAYGLKLRKTPSAEIAKRVKEV-----LSQLGLGHLGERYPHQLSGGQQ 149 +L+ H V N+ YG++ IAK + V +S L +GHL +R P +LSGG++ Sbjct: 92 SLFAHLNVQRNLEYGMR-------RIAKSARHVSLDHAVSLLDIGHLLQRKPDKLSGGER 144 Query: 150 QRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQGEAMA 209 QRVAIARAL +P+++L+DEPL+ LDAK + E +L L L + L V+H E Sbjct: 145 QRVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLERLHDELDIPVLYVSHSADEVAR 204 Query: 210 ISDRILLLNNGRIEQQGTPQSM 231 ++D ++LL GR+ G Q + Sbjct: 205 LADHLVLLETGRVIASGATQDL 226 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 129/214 (60%), Gaps = 4/214 (1%) Query: 22 ILKGVSMQLQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGTIDIGSRRVFDGARQFEMP 81 +L + + +G+VV + GPSGSGK+TL++ V GLE + G+I + V G + +P Sbjct: 16 VLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVDGISV--GDPKTNLP 73 Query: 82 AEERNLGLVFQSYALWPHKTVADNVAYG-LKLRKTPSAEIAKRVKEVLSQLGLGHLGERY 140 A +G+VFQ++ L+PH ++ +N+ G +++ E A+R + L ++GL +++ Sbjct: 74 ALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKYLDRVGLIAQKDKF 133 Query: 141 PHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMV 200 P QLSGGQQQRVAIARAL +P +L DEP S LD ++ E + L + G++ ++V Sbjct: 134 PGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMVGL-AQDGMTMMVV 192 Query: 201 THDQGEAMAISDRILLLNNGRIEQQGTPQSMYQT 234 TH+ G A +++R++ ++ G I + T + T Sbjct: 193 THEMGFARKVANRVIFMDQGTIVEDCTKDEFFGT 226 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 713,000 Number of extensions: 30380 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 50 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 54 Length of query: 362 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 279 Effective length of database: 726,862 Effective search space: 202794498 Effective search space used: 202794498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)