BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4418.p (356 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 144 6e-36 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 142 2e-35 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 139 2e-34 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 85 4e-18 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 162/346 (46%), Gaps = 25/346 (7%) Query: 24 AQTSVTVYGLIDTGVEYLNNANAAGNSVVRL-SSGNMNTSRIGFRGSEDLGGGLKAIFQL 82 A +S+++YG ID+G+ ++ N A+G S +L S+G +R+G +G E+LGGGL F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 83 ENGFKLDTGGFDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTYDFIGPFDPMGYSANYS 142 E+GF TG D AN++FNR S++G+ G FG + GR S + ++P Y + Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPFQYRYVH- 148 Query: 143 WVTSAGATGGRKDG---MPTGV------SNLVKYQGEFSGVKIGAMYGFGEVAGQTSNGA 193 + AGA G DG P G SN +Y G+F A Y GEV G N A Sbjct: 149 IIPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFGKFGSFTASAEYIMGEVPGSNRNQA 208 Query: 194 KYGVGLGWGSGPFSLAATYDRNNST--TTVNTAYDRATSAHLAAGYQLADAWKFNLGYRY 251 VGL + G F++ Y R N T + Y GY++ DA + GY Sbjct: 209 AKAVGLVYNDGTFTVGGAYTRQNPNIGTVAASDYREQNQTTFGGGYKI-DALRITGGYLK 267 Query: 252 YKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGAIYYQNIKNVAKD-ADPIMYSLRLKYA 310 + S A ++ W G Y FTPA ++ Y ++ + A + + YA Sbjct: 268 TTTAITSQAKNI-----WLGARYDFTPAASLTAGYYRTTLETAQSEIARRNLLIVGATYA 322 Query: 311 MSKRTDLYLSTAYAKAKNNQLVGLSRDDVGFGNSQFGMTMGMQHRF 356 +S RT L YA L GL+ G Q G++ G+ H F Sbjct: 323 LSPRTSL-----YADIDQAVLHGLASLPSGSQTRQTGISAGISHIF 363 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 181/370 (48%), Gaps = 27/370 (7%) Query: 1 VQRNHLAASMLAAFATLAAAGAQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMN 60 ++++ LA ++L AFA A AQ+SVTVYG++D G+ + A + + ++SGN + Sbjct: 1 MKKSLLALAVLGAFA----GAASAQSSVTVYGIVDMGITSQDTGAGANDRLNGVTSGNQS 56 Query: 61 TSRIGFRGSEDLGGGLKAIFQLENGFKLDTGGFDG-DANQIFNRQSNVGLEGGFGRVVAG 119 SRIGF+G+EDLG GLKA F LE DTG D FNR + VGL G FG V G Sbjct: 57 ASRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLG 116 Query: 120 RSYSTTYDFIGPFDPMGYSANYSWVTSAGATGGRKDGMPTGVSNLVKY-QGEFSGVKIGA 178 R S D DP G + +++ K G +SN +KY +SG K GA Sbjct: 117 RQVSAIKDAYDAIDPFGDGGTIAPISAIFFNAALK-GDNGRISNSIKYTSNSYSGFKFGA 175 Query: 179 MYGFGEVAGQTSNGAKYGVGLGWGSGPFSLAATYDRNNSTTT-------VNTAYDRATSA 231 Y FGE AG+T + YG+ LG+ +GP ++ Y + +T V + D+ T Sbjct: 176 HYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFKPVKNSKDKMT-- 233 Query: 232 HLAAGYQLADAWKFNLGYRYYKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGAIYYQNI 291 L A Y A K + Y K +G D + Y GVS K A +++ + + Sbjct: 234 FLGATYDFGVA-KLHAAYGDSKNQPVAGNVDNKYRNYMLGVSAKVGAAGSIMASYTVNDT 292 Query: 292 KNV----AKDADPIMYSLRLKYAMSKRTDLYLSTAY-AKAKNNQLVGLSRDDVGFGNSQF 346 + A D D + + +SKRT+LY ++ + KN +L L D G S F Sbjct: 293 RTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHTSNDKNAKLNALVADQSG---SMF 349 Query: 347 GMTMGMQHRF 356 +G++H+F Sbjct: 350 --AVGVRHKF 357 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 178/378 (47%), Gaps = 51/378 (13%) Query: 22 AQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMNTSRIGFRGSEDLGGGLKAIFQ 81 A AQ VT+YG+ D + Y +N A N+ +R SGN+ SRIGF+G+EDLGGG +AIFQ Sbjct: 23 AGAQNGVTIYGIADVAMVYSSNQGGASNTYMR--SGNLAGSRIGFKGTEDLGGGTQAIFQ 80 Query: 82 LENGFKLDTGGFDGDANQIFNRQSNVGLEGG-FGRVVAGRSYSTTYDFIGPFDPMGYSAN 140 LE+GF LDTG ++ +FNRQ+ VG+ +G + AGR Y+ Y F+GP P Sbjct: 81 LESGFNLDTGEMS-SSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPTN---- 135 Query: 141 YSWVTSAGATGGRKDGMPTGV--SNLVKYQGE-FSGVKIGAMYGFGEVAGQTSNGAKYGV 197 S + GA G DG+ T + +N + Y ++G+++ A+ GFGE AG +G Sbjct: 136 -SLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISA 194 Query: 198 GLGWGSGPFSLAATYDRNNSTTTVNTAYDRATSAHLAA-----GYQLADAWKFNLG-YRY 251 + + ++ A Y R N++ + SA+ GY AD+ ++ G RY Sbjct: 195 AIKYDINNWNFALGYQRLNNSNNPGGVWSPNASANFNTSPVNNGYLSADSAQYLAGAARY 254 Query: 252 YKKTLASGATDLRSDFYWGGVS----------------YKFTPAMTVIGAIYYQNIKNVA 295 + GA R ++ G S Y+ TP V Y K Sbjct: 255 TMGKVIVGANASRVEYRPNGNSLFTQKATFDTLGLLTGYQMTPVFFVSVGYSYTKEKAAN 314 Query: 296 KDADPIMY---SLRLKYAMSKRTDLYLSTAYAKAKNNQL----VGLSRDDVGFGNSQFG- 347 +DP Y +L Y+ SKRT +Y AY AK N L G R G+SQ G Sbjct: 315 GISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSGPVRAVAVVGDSQNGT 374 Query: 348 ---------MTMGMQHRF 356 +G++H F Sbjct: 375 PSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 153/365 (41%), Gaps = 56/365 (15%) Query: 22 AQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMNTSRIGFRGSEDLGGGLKAIFQ 81 A AQ+SV G +D L N+ AG+ V SSG M TS G +G+E+LGGGL+A F Sbjct: 26 ALAQSSVQFVGTVDAFAGSLKNSGDAGSKSVVNSSG-METSWWGVKGTENLGGGLQAQFA 84 Query: 82 LENGFKLDTGG---FDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTYDFIGPFDPMGYS 138 L + F+ DTG FD D +F+R ++VGL G FGRV GR + + F P G S Sbjct: 85 LSSFFRPDTGAQGRFDSDT--MFSRDAHVGLSGSFGRVSVGRDLAPNFIPTLTFSPFGGS 142 Query: 139 ANYSWV-----TSAGATGGR----KDGMPTGVSNLVKY-QGEFSGVKIGAMYGFGEVAGQ 188 +S + T +G+ G+ TG SN + Y + G + FGE AG+ Sbjct: 143 FAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQFGEQAGK 202 Query: 189 TSNGAKYGVGLGWGSGPFSLAATYDR---NNSTTTVN---------TAYDRATSAHLAAG 236 YG + GP S A + NN +V T Y++AT A Sbjct: 203 PGKN-NYGANTMYEQGPLSFGAYFQSVKVNNPLDSVTSGDSRVFTFTPYNQATGATYTLA 261 Query: 237 YQLADAW----KFNLGY-------RYYKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGA 285 D W ++L + Y L A D + D V + + Sbjct: 262 ASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDLKSNTVQLGTSVPVGKGSV 321 Query: 286 IYYQNIKNVAKDAD------------PIMY---SLRLKYAMSKRTDLYLSTAYAKAKNNQ 330 ++ NV D D I+ SL Y +SKRTD+Y +Y K +Q Sbjct: 322 LFSWARTNVKADGDFSAVLGGAGGKSSIIRNTASLGYDYFLSKRTDVYSVVSYDKL-TDQ 380 Query: 331 LVGLS 335 G+S Sbjct: 381 STGIS 385 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 686,213 Number of extensions: 31079 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 4 Length of query: 356 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 273 Effective length of database: 726,862 Effective search space: 198433326 Effective search space used: 198433326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)