BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4415.p
         (149 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096508|ref|YP_001101583.1| hypothetical protein HEAR3360 [...    71   2e-14

>gi|134096508|ref|YP_001101583.1| hypothetical protein HEAR3360
           [Herminiimonas arsenicoxydans]
          Length = 155

 Score = 71.2 bits (173), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 6   RKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFERWEAR 65
           R++++A LFE  A++     ++     D  H  A AV+ +  A + N I+N ++E  E  
Sbjct: 23  RRILHALLFEICALVILVPLMSYGFDMDFFHFGALAVILAVCAMVCNMIYNHVYEMVERH 82

Query: 66  QPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYTYLFN 125
              R R    R  H +GFE   + + +PL AWWL IS+  AL LD    VFFM+Y + FN
Sbjct: 83  YGWR-RTIGMRVWHTLGFEAFFMAVALPLTAWWLHISVIDALVLDLVFSVFFMLYAFAFN 141

Query: 126 LLFD 129
            ++D
Sbjct: 142 WVYD 145


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.333    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 299,144
Number of extensions: 11802
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 75
Effective length of database: 756,517
Effective search space: 56738775
Effective search space used: 56738775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 124 (52.4 bits)