BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4413.p
         (300 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094932|ref|YP_001100007.1| AraC family transcriptional reg...    63   2e-11

>gi|134094932|ref|YP_001100007.1| AraC family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 366

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 187 PTT-RPVRLSRLHE----ERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYT 241
           PTT RPVR++   +    ++A     + +   + I   A   +MS   F R FK  TG+T
Sbjct: 217 PTTVRPVRVAEPSKNNKIQQASRWFAEHMAEPINILSAANFVSMSERNFQRQFKRETGWT 276

Query: 242 PHQWLLVQRVEMAREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKLR 300
           PH++LL  R+E  R+ L  T L + +IA  C F    H S++F + +  +P  +RR  R
Sbjct: 277 PHEFLLHLRLEAVRQQLTETDLPVDKIARRCGFLSGEHVSKLFRKHLSVSPCEYRRNER 335


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 531,054
Number of extensions: 19222
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 219
Effective length of database: 733,452
Effective search space: 160625988
Effective search space used: 160625988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)