BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4412.p (519 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate senso... 154 7e-39 gi|134096599|ref|YP_001101674.1| putative sensor histidine kinas... 76 3e-15 gi|134094677|ref|YP_001099752.1| putative two-component sensor k... 73 3e-14 gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 72 7e-14 gi|134093420|ref|YP_001098495.1| putative two-component sensor k... 71 1e-13 >gi|134093686|ref|YP_001098761.1| putative C4-dicarboxylate sensor protein dctS [Herminiimonas arsenicoxydans] Length = 599 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 145/265 (54%), Gaps = 7/265 (2%) Query: 259 GTFTEYMGTATDITVRRQAEYAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSN 318 G T +MG+ DI+ R++ E R Q ++ AR T+G++ +++AHE+NQPL +I S Sbjct: 319 GKQTGWMGSILDISDRKRVEDLNRQQQEKLQASARLATMGEIASTLAHELNQPLAAISSY 378 Query: 319 AGASLRWLNRPVP-----DLEHARAGLRDIISEGQRAGGIISGLQDLTRNRAPEFERVNL 373 +L L P ++E L ++ QRAG II + + R P +++ Sbjct: 379 TTGALNLLASEQPKEATINIEMLTQALEKANAQAQRAGQIIRSVHTFVKKREPMRTAISI 438 Query: 374 HALIRHILTLSRSQLEQREVSLTLSLMPADVFVLGDPVQLQQVMLNLVINAIDAMTSVVP 433 LI + L Q +Q V++ + + A VL D V L+QV+LNL N I++M SV P Sbjct: 439 SELIGSVTPLVELQAQQYFVTIKVDIPAALPAVLADQVLLEQVLLNLTRNGIESMQSVAP 498 Query: 434 NTRLLGISASC--CNEQRVEVRVQDSGVGIAAEAMSRVFDAFYTTKENGMGMGLAICRSI 491 R+L I+A+ + V V + D G GIA+E R++ F++TK +GMGMGL+ICR+ Sbjct: 499 EKRILRIAAAIDPATPRNVVVSISDQGHGIASEVAERLYSPFFSTKADGMGMGLSICRTA 558 Query: 492 IEAHRGRLRVMAAEPQGTLFFFDLP 516 IE H G L + GT+F F LP Sbjct: 559 IEFHGGTLTHVDNRGGGTIFRFSLP 583 >gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 678 Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 39/234 (16%) Query: 297 VGQLTASIAHEINQPLMSIVSNA-------GAS-------LRWLNRPVPDLEHARAGLRD 342 +G++TA +AHEIN P+ + N GA+ LR +++ + + L Sbjct: 459 IGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAATPVQGELRLMDQQIHRINTIVTKLLQ 518 Query: 343 IISEGQRAGGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQL-EQREVSLTLSLMP 401 S G+ AG + A + V+ L+RH+L S ++ R +L + + Sbjct: 519 FASPGEFAGYV--------EAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRHATLAVHINR 570 Query: 402 ADVFVLGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNE---QRVEVRVQDSG 458 +LQQV++NL NA+ AM + RL S ++ + V + V D+G Sbjct: 571 G---------ELQQVLINLFTNAVHAMKN---GGRLTIESRDWIDDAGARGVTINVIDTG 618 Query: 459 VGIAAEAMSRVFDAFYTTK-ENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLF 511 GI E +R+FDAF+TTK + G G+GL+I +++ + G + V + E GT F Sbjct: 619 AGIKKEDQARIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVKSEEGVGTEF 672 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] Length = 577 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 35/264 (13%) Query: 270 DITVRRQAEYAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRP 329 +I ++ + A+++A+ E +A T + A I+HE+ PL SI+ + L+ Sbjct: 101 EIEAHQRTDVALQSAKEAAEFANQAKT--RYVAGISHELRSPLNSILGYSQILLKN---- 154 Query: 330 VPDLEHARAGLRDIISEGQRAG----GIISGLQDLTRNRAP----EFERVNLHALIRHIL 381 EH A R I R+G G++ L DL R A E + L A + +L Sbjct: 155 ----EHLAAAPRTAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLL 210 Query: 382 TLSRSQLEQREVSLTLSLM-PADVFVLGDPVQLQQVMLNLVINAIDAMT--SVVPNTRLL 438 ++ R Q E + + L + +VL D +L+Q+ +NL+ NA+ SV + Sbjct: 211 SMVRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGSVTLHVE-- 268 Query: 439 GISASCCNEQRVEVRVQDSGVGIAAEAMSRVFDAFYTTK------ENGMGMGLAICRSII 492 C+ V V D+G+GIA + R+F F E G G+GLAI +I Sbjct: 269 ------CSPASVRFDVVDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLI 322 Query: 493 EAHRGRLRVMAAEPQGTLFFFDLP 516 G L +++ + QG+ F LP Sbjct: 323 LLMNGSLNLVSMQGQGSTFIVRLP 346 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 22/248 (8%) Query: 279 YAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEHARA 338 + I AQ + R+ L ++++H++ PL S+V + + L P L ++ Sbjct: 667 HYIEVAQDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSES----LTMSKPPLTSSQQ 722 Query: 339 GLRDII-SEGQRAGGIISGLQDLTRNRAPEFERVNLHAL-----IRHILTLSRSQLEQRE 392 L + E +R ++S L D+ R ++ E + NL L + L S+S + E Sbjct: 723 ELAQALHDEARRMSNLVSNLLDMARIQSGEV-KFNLQWLQFEEVVGSALRASQSAIAHHE 781 Query: 393 VSLTLSLMPADVFVLGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEV 452 + L+ P V D V +++V+ NL+ NA P + I+A + +EV Sbjct: 782 IKTRLA--PDLPLVRFDAVLIERVLCNLIENA----AKYTPAGSRIVIAAEISG-RFLEV 834 Query: 453 RVQDSGVGIAAEAMSRVFDAFYTTKEN----GMGMGLAICRSIIEAHRGRLRVMAAEPQG 508 V D+G G+ A +FD F + G+G+GLAICR+I+EAH+G +R + G Sbjct: 835 SVYDNGPGLPAGQEEAIFDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGG 894 Query: 509 TLFFFDLP 516 F LP Sbjct: 895 ASINFTLP 902 >gi|134093420|ref|YP_001098495.1| putative two-component sensor kinase [Herminiimonas arsenicoxydans] Length = 767 Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 131/281 (46%), Gaps = 25/281 (8%) Query: 241 DTGEIRYLSGIGKPVWVDGTFTE----YMGTATDITVRRQAEYAIRAAQV-DVERVARAN 295 DTG + + I P + G E + + + R + Y + + DV R+ Sbjct: 472 DTGNLHWQHQIDVPRRMGGAEAENDISLLARGSRLPAARDSGYVVVFDDISDVISAQRSI 531 Query: 296 TVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPD-----LEHARAGLRDIISEGQRA 350 G++ +AHEI PL I +A L + + LE + A + + +S QR Sbjct: 532 AWGEVARRLAHEIKNPLTPIQLSAERLQMKLEGKLNEQDARILERSTATIVNQVSAMQR- 590 Query: 351 GGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSLTLSLMPADVFVLGDP 410 ++ +D + ++L+ALI IL L ++ ++R++ + L V+GD Sbjct: 591 --MVDDFRDYAKTPPAVLSPLDLNALIEEILHLYQTG-DERDI-IHARLAEGLPLVMGDA 646 Query: 411 VQLQQVMLNLVINAIDAMTSVV--PNTRLLGI--------SASCCNEQRVEVRVQDSGVG 460 QL+QV+ NL+ NA DA+ + +T + I S+ V++ + D+G G Sbjct: 647 TQLRQVIHNLLQNAQDAVADQIRQESTARIDIITEEIHYRSSDGTVSNAVQLSITDTGPG 706 Query: 461 IAAEAMSRVFDAFYTTKENGMGMGLAICRSIIEAHRGRLRV 501 + + ++ F+ + T+K G G+GLA+ + IIE H GR+ + Sbjct: 707 FSPKILAHAFEPYITSKPRGTGLGLAMVKKIIEEHGGRIDI 747 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 893,846 Number of extensions: 34897 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 15 Length of query: 519 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 433 Effective length of database: 716,977 Effective search space: 310451041 Effective search space used: 310451041 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)