BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4407.p
         (627 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093675|ref|YP_001098750.1| putative metal-dependent hydrol...   126   3e-30

>gi|134093675|ref|YP_001098750.1| putative metal-dependent hydrolase
           [Herminiimonas arsenicoxydans]
          Length = 581

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 150/573 (26%), Positives = 248/573 (43%), Gaps = 62/573 (10%)

Query: 4   AASPTPDLILLNGKIHTVDQQNP-IAEAVAIGGGKFLDVGSATDVMRSKQAHTKVIDLGG 62
           A +P  + I   G I T+    P  AEAVAI  GK ++VGS    ++ +   T+++DL G
Sbjct: 32  ATAPRAEAIYFGGNILTMAGDTPRYAEAVAIRNGKIINVGSKAAALQLRDERTRMVDLAG 91

Query: 63  RTVIPGLNDSHLHLIRGG---LNYNL----ELRWEGVPSLADALRMLKDQAARTP----H 111
           +T++PG  D+H H    G   L+ NL    + +   +P+L   L +LK+  ++ P     
Sbjct: 92  KTLLPGFIDAHGHTWMTGFQKLSANLLPPPDGQASDIPTL---LSLLKEWQSKNPVAIDK 148

Query: 112 PQWVRVVGGWTEFQFAEKRMPTLDELNAAAPDTPVFVLHLYDR-ALLNRAALQAVGYTKD 170
             W+ +  G+ + Q AEKR PT  +L+  + + P+ ++H     A +N  AL+  G T  
Sbjct: 149 VGWI-IGFGYDDSQLAEKRHPTAADLDQVSTEIPIVIIHQSSHLASMNHKALELAGITAA 207

Query: 171 TPNPPGGEIVRDASGH-PTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRE---- 225
           +PNP GG I R A G  P G+L      M  +A + K   +   +  N++ +        
Sbjct: 208 SPNPAGGVIRRLADGRTPDGVL----EEMAFFAPMFK---VLASFDQNASEKIALAGADY 260

Query: 226 LNRLGVTSAIDAGGGFQNYPDDYQIINQLAADGQLTIRIAYNLFTQSKGGELADFQKWTG 285
             + G T+A +     Q      Q  ++LA +G+L I IA     Q++          T 
Sbjct: 261 YAQFGFTTAQEGRASKQI----TQTWHKLADEGKLKIDIAAYPDLQAES---------TF 307

Query: 286 MVKPGDGDDFLRH-NGAGEMLVFSAADFED---FLEPRPDLAEGM------------EEE 329
           M + G    +  H   AG  L    +         EP   +  G              ++
Sbjct: 308 MSEAGTKKTYRNHFRIAGVKLSLDGSPQGKTAWLSEPYVHVPPGQPADYRGYPAIPKSDD 367

Query: 330 LERVVRHLVSNRWPFRLHATYDESISRMLDVFEKVNREIPFDGLHWMFDHAETITERNIE 389
           L+ +V    +N W    H   D +   +++   K  +         +  HA+T+ E  ++
Sbjct: 368 LQSLVNQAFNNNWQVLAHTNGDAAADALINAVAKAEKRYGKGDRRTVMIHAQTVREDQLD 427

Query: 390 RVHALGGGIA-IQHRMAFQGEYFIDR-YGAEAAEHTPPIAKMLKMGVPVGAGTDATRVAS 447
           R+  LG   +       + G++  D   G + A    P    LK G+      DA  VA 
Sbjct: 428 RMKQLGIVPSFFSMHTYYWGDWHRDETLGKDRALRISPTQSALKRGMWFTEHHDAP-VAL 486

Query: 448 YNPWTALYWLVSGRTVGGAKLYGAAGRLPRETALELWTAGSAWFSSEQAKKGRIQVGQLA 507
            +    L+  V+  T  GA L G   R+    AL+  T  ++    E+  KG I VG+LA
Sbjct: 487 PSSIMILHTTVNRTTRSGAVL-GEDQRVSPYIALKSITDWASRQYFEEKSKGTISVGKLA 545

Query: 508 DLAVLSADFFSVHEDEIKSIESVMTVVDGKVVY 540
           DL +L  D   V    I+ I+ + T+ +GK ++
Sbjct: 546 DLVILDKDPLKVDPATIRDIKVLETIKEGKTIF 578


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,303,762
Number of extensions: 57455
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 627
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 540
Effective length of database: 713,682
Effective search space: 385388280
Effective search space used: 385388280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)