BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4405.p
         (275 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094877|ref|YP_001099952.1| biotin biosynthesis BioH protei...    54   6e-09

>gi|134094877|ref|YP_001099952.1| biotin biosynthesis BioH protein
           [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 54.3 bits (129), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 19/258 (7%)

Query: 22  PVVFGHGWPLDGDMWEYQMNFLAERGYRVIAYDRRGFGRSSQPWNGYDYDTFADDLAELM 81
           P+   HGW +   +W      LA++          G+ +S      Y+ D   D +    
Sbjct: 3   PLRLWHGWGMHPAVWSGLCTELAQQDIATQTPALPGYDQSETV-APYNLDALVDAMLP-- 59

Query: 82  DKLDLQGATLVGFSMGGGDVARYIGRHG----SKRVAKAALLGAVTPIFGQAPDFPQGVP 137
                  AT + + + G  +   +  H      +R+++  L+GA TP F Q  D+P G+P
Sbjct: 60  -------ATNIPYVLCGWSLGALLALHAARRHPQRISRLILIGA-TPSFVQRADWPHGIP 111

Query: 138 AEVFAGIKEGLQKDRAQFISDFAAVFFGTNRPGKSNAVSPAVLAQTFNIAMLASLKGTLD 197
             V       +  D A  +  F A+    +   +S A +   L Q      L + +  + 
Sbjct: 112 LAVVDEFIAAVAHDPAAALKRFMALSNQNDVHARSMART---LTQMLTANPLPTAETLIA 168

Query: 198 CVSAFSGTDFREDIKKFNFPTLVIHGDDDQIVPIQTTGKLVAEMVPGAQLKIYGGAPHAL 257
            ++    +D R  I     P L++HG  D ++P+    + +A+ +P AQL I   A H  
Sbjct: 169 GLTLLRDSDLRAGIADITQPVLLLHGARDPLMPV-AAAQWLADALPQAQLDILPEAAHTP 227

Query: 258 CATHKDQVNADLLAFLKG 275
             + +    A + +F + 
Sbjct: 228 FLSDQQHCCASIASFYRA 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 583,043
Number of extensions: 25895
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 195
Effective length of database: 736,747
Effective search space: 143665665
Effective search space used: 143665665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)