BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4404.p
         (177 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094729|ref|YP_001099804.1| putative stress response DNA-bi...   243   4e-66

>gi|134094729|ref|YP_001099804.1| putative stress response
           DNA-binding protein (Dps) [Herminiimonas arsenicoxydans]
          Length = 181

 Score =  243 bits (620), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 137/176 (77%)

Query: 1   MSLDATQRQQLEQRRKAPLATPGVLSAQASKEIGGALTMLLADIFALYLKTKNFHWHMSG 60
           M     ++  +++R+ APL TP  L+A+A+K+I GA+  +LAD+FALYLKTKNFHWHMSG
Sbjct: 1   MKKAVAKKSDVKRRQIAPLITPSDLNAKATKDIAGAMNGVLADVFALYLKTKNFHWHMSG 60

Query: 61  PHFRDYHLLLDDQSQQIIVITDAVAERVRKIGGTTLRSTGHVGRLQRLADNDADFVTPSD 120
           PHFRDYHLLLDDQ+ QI  +TD +AER+RK+GGTTLRS GH+ RLQR+ DNDAD+V P+D
Sbjct: 61  PHFRDYHLLLDDQAVQIYAMTDLIAERIRKVGGTTLRSIGHIARLQRILDNDADYVEPND 120

Query: 121 MLAELREDNLRLVGFMLATHELCDEHGDVATASLLENWIDEAEQRAWFLFESGRTS 176
           MLAELREDN  L   +   H +CDEH D+ T SL+E WIDE EQR WFLFE+ R S
Sbjct: 121 MLAELREDNKILCARLREAHGVCDEHHDIGTTSLIEVWIDETEQRTWFLFEASRHS 176


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 330,683
Number of extensions: 12307
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 101
Effective length of database: 749,927
Effective search space: 75742627
Effective search space used: 75742627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)