BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4399.p (206 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate trans... 122 9e-30 gi|134093850|ref|YP_001098925.1| putative two-component system r... 69 2e-13 gi|134093419|ref|YP_001098494.1| putative two-component response... 69 2e-13 gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regula... 64 7e-12 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 60 7e-11 >gi|134093685|ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Herminiimonas arsenicoxydans] Length = 196 Score = 122 bits (307), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 13/197 (6%) Query: 5 VYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPS----TPC--CLLLDMKMPG 58 ++++DD+ ++R +L+ L + G A + S FL L S TP C+LLD++MP Sbjct: 2 LHIIDDEEVIRDSLMWLAKSRGIPAVAYDSGKAFLAT-LDSISRTTPQGQCVLLDVRMPD 60 Query: 59 ADGFDVVHRLEQRG--DAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEE 116 G + L R PVIF++G+G +P V +K GA +F KP D +L+ V+E Sbjct: 61 VSGIALFDLLSSRSMTQLFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRVQE 120 Query: 117 ALTVAGRQLHKRVEHAANASRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHK 176 AL+ A Q V A +RL L+ REREVL+L + G +NK IA +LGIS TV+VH+ Sbjct: 121 ALS-ASEQASASV---AIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHR 176 Query: 177 RRVMDKMQTKTLADLVR 193 + DKM KT +L R Sbjct: 177 AHIFDKMNVKTAVELAR 193 >gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 22/218 (10%) Query: 3 STVYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQV--PLPSTPCCL-LLDMKMPGA 59 + V +V+D+ ++R L LL GY++ + + + P L L+D+ +P Sbjct: 19 APVLLVEDEPLIRRRLEGLLLQLGYSSDALVMTGSLAEARACMVNQPIALALVDLGLPDG 78 Query: 60 DGFDVVHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEALT 119 G D++ + A+P++ IS + T + A++AGA ++ K +D + ++ L Sbjct: 79 SGIDLIAEMHMADPALPILVISAWSTEDAILAALRAGATGYVLKERDDMEVALSIRSVLR 138 Query: 120 --------VAGR---QLHKRVEHAANASRLEKLTPREREVLELAIGGLLNKQIATELGIS 168 +A R +L + A E L+PRE E+L L GL N++I+ +L +S Sbjct: 139 GGAPIDPFIARRIIDELRPKTMPHEKAPNNETLSPRESEILGLVAQGLANREISEQLHLS 198 Query: 169 EITVKVHKRRVMDKMQTKTLADLVRAAERLQIHSARQR 206 T++ H + + K+ + IH AR R Sbjct: 199 RYTIECHIKHIYRKLAVSSRTK--------AIHEARSR 228 >gi|134093419|ref|YP_001098494.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] Length = 236 Score = 68.6 bits (166), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 STVYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPSTPCCLLLDMKMPGADGF 62 + + VVDD+ +R L +L G+ +A + ++ + P +LLD+ MP DG Sbjct: 2 ANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDGV 61 Query: 63 DVVHRLEQRGD-AIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEALT 119 ++ ++ G +PVI +SG+ TI T V+A + GA FL KPI ++LL AV++ ++ Sbjct: 62 TLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGIS 119 >gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas arsenicoxydans] Length = 235 Score = 63.5 bits (153), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 24/209 (11%) Query: 4 TVYVVDDDGMVRTALLRLL------AAAGYTARGFASADEFLQVPLPSTPCCLLLDMKMP 57 +V ++DD + R+ + LL + G A G Q+ P +LLD+ MP Sbjct: 19 SVLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQL----QPDVVLLDLNMP 74 Query: 58 GADGFDVVHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEA 117 G G + + Q VI ++ A+++GA +L K I+ + L+ A++ A Sbjct: 75 GISGLQTLQLMLQDCPNTAVIMLTVSEDAEDLGVALQSGARGYLIKNIDADYLVRAIQRA 134 Query: 118 LTVAGR-----------QLHKRVEHAANASRLEKLTPREREVLELAIGGLLNKQIATELG 166 QL + S L+KLTPRER++L G NK IA L Sbjct: 135 AAGEAVVAEAMTSKLIAQLQNAGQRTEVRSELDKLTPRERDILACLARGESNKLIARTLD 194 Query: 167 ISEITVKVHKRRVMDKMQTKTLADLVRAA 195 +++ TVK+H + ++ K+ L+ V+AA Sbjct: 195 VADSTVKIHVQNILKKL---NLSSRVQAA 220 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 60.5 bits (145), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 5 VYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPSTPCCL-LLDMKMPGADGFD 63 + +V+DD ++ AL R L AGY A +A E L + L LLD+ +P DG Sbjct: 3 ILIVEDDAVLAAALTRALTQAGY-AVDYADNGEDANRALSNDAYALVLLDIALPKMDGLA 61 Query: 64 VVHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIE----DERLLGAVEEALT 119 V+ RL +R +PV+ ++ T+ V + GA +++TKP + + R+ + Sbjct: 62 VLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQF 121 Query: 120 VAGRQL-HKRVEHAANASRL-EKLTPREREVLELAI 153 AG+ L H + A RL P E V ELA+ Sbjct: 122 DAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAV 157 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 361,702 Number of extensions: 14186 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 12 Length of query: 206 Length of database: 1,000,347 Length adjustment: 77 Effective length of query: 129 Effective length of database: 746,632 Effective search space: 96315528 Effective search space used: 96315528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)