BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4397.p
         (190 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094312|ref|YP_001099387.1| hypothetical protein HEAR1081 [...   155   1e-39

>gi|134094312|ref|YP_001099387.1| hypothetical protein HEAR1081
           [Herminiimonas arsenicoxydans]
          Length = 173

 Score =  155 bits (392), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 109/167 (65%)

Query: 21  MVLGLQTPQGASLDDLAPLMPPLLSYVLSFVYIGIYWVNHHHLLQLATQVDRRVLWANLH 80
           MVL L+ P G SLD L  L+P  LSYVLSF Y+GIYW NHHH+L    +V   +LWANLH
Sbjct: 1   MVLELKIPHGESLDALKSLIPVFLSYVLSFAYLGIYWNNHHHMLHTCEKVTGAMLWANLH 60

Query: 81  LLFWLSLLPFVTSWVAHHHRQSAPVACYGVVLLMCSVSFLLLKLALRHSEAAHPSLAALI 140
           LLFWLSL+PFVT W+  +H    P A YGVVLLM ++++ +L+  +  S+     L   +
Sbjct: 61  LLFWLSLIPFVTGWMGENHFGPMPSAIYGVVLLMSALAYWILERLIIASQGPQSLLKRAV 120

Query: 141 GHGRKNALSILLYAVAIPLSLFTPMGATAIYVLLALLWFLPDHHFEQ 187
           G   K  LS +LYA+AIP + +    + ++YVL+A++W +PD   E+
Sbjct: 121 GKDWKGKLSPVLYAMAIPAAFWLEWLSISLYVLVAIMWLVPDKRIER 167


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 306,253
Number of extensions: 9583
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 113
Effective length of database: 746,632
Effective search space: 84369416
Effective search space used: 84369416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)