BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4396.p
         (217 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093489|ref|YP_001098564.1| putative phosphoglycolate phosp...    56   2e-09

>gi|134093489|ref|YP_001098564.1| putative phosphoglycolate
           phosphatase (PGP) (gph) [Herminiimonas arsenicoxydans]
          Length = 209

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 89  PGIERLLEHIARIGGRSAVVTNAPRANAELMLKATGLAGRFDTLVIGDELARAKPDPLPY 148
           PG+   L+ +   G R A VTN P A    ++K TGL   F+ +  GD  A+ KPDP+  
Sbjct: 81  PGVHEGLQEMQAKGLRLACVTNKPIAFTLPLMKKTGLHDYFEIIYGGDSFAKRKPDPMQL 140

Query: 149 LTALQVLGGQPQQAVAFEDSSSGVKA--ASGAKVWT 182
           L         P Q VA  DS +  KA  A+G KV  
Sbjct: 141 LQVCADFKLAPAQIVAIGDSINDSKAARAAGCKVLN 176


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 411,658
Number of extensions: 15659
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 139
Effective length of database: 743,337
Effective search space: 103323843
Effective search space used: 103323843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)