BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4394.p (295 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 92 3e-20 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 89 2e-19 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 75 3e-15 gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [H... 71 5e-14 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 71 6e-14 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 6/181 (3%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 M +LKY +A E H G AAE QP L+ I +LE++LG LFER G I +T + Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GQALLNRARQI---SLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREA 117 G ++ +A ++ + + E A++ D G RLG I T+A ++LP L + ++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKD---PLVGPFRLGIIYTIAPYLLPPLVKAMIERV 117 Query: 118 PKVTIELKVSMNDVLLAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHHPIFE 177 P++ + L+ + LL L+ GE+D + + D+ + + + VV HHP E Sbjct: 118 PQMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAE 177 Query: 178 R 178 R Sbjct: 178 R 178 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 ++ R L+YF +AEE H GRAA RL TQP L++ I LE LG LF R R + LT Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GQALLNRARQI---SLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREA 117 G ALL A++I + + + R + A GR + L + T +LP +E Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGR---LSLAFVSTADYSVLPPFLREFRESY 119 Query: 118 PKVTIELKVSMNDVLLAGLKTGELDIVL 145 P V I+L+ + DV L L G +D+ L Sbjct: 120 PGVEIDLREATTDVQLDDLMQGRIDVGL 147 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 3/193 (1%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 D DL F E G + AER + + + I +EE LG PL R RG+ T V Sbjct: 3 FDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPV 62 Query: 61 GQALLNRARQISLMMDETAR-EIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPK 119 G+AL++ AR I+L E R E+ +YA G +G++R+ LP L P Sbjct: 63 GKALVHHAR-IALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPN 121 Query: 120 VTIELKVSMNDVLLAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHHPIFER- 178 V I+L+ ++ +++ L G +DI + + F T D++ ++ + HP+ R Sbjct: 122 VNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVRS 181 Query: 179 RIKLRHLLEYQWV 191 I L+Y ++ Sbjct: 182 SIHFAETLDYDFI 194 >gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [Herminiimonas arsenicoxydans] Length = 289 Score = 71.2 bits (173), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%) Query: 6 LKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAVGQALL 65 ++ F + + G +AA L +TQ ++ I LE QL LF+R+ R LT G+ALL Sbjct: 1 MRVFVAVIDYGSFSKAARELHRTQSVISYTIANLEAQLNVALFDRSKRKPTLTEAGKALL 60 Query: 66 NRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPKVTIELK 125 AR + L +D A G E + + L Q + P V + L+ Sbjct: 61 ADARTVGLKVDAMRARAKTLAQGLEAEVSIAVDVMFPNCRLVAALQAFQQRFPTVALRLR 120 Query: 126 V-SMNDVL-LAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHHPI 175 + ++ V+ L G +T ++ I GPM+ + F ++ M+ +A+P HP+ Sbjct: 121 IEALGAVMHLVGQRTCQIGIA-GPMLDFADTFQSQPAGSITMLPVAAPSHPL 171 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 4 RDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAVGQA 63 R LK F +A RAAE L TQPA++ + +LE+ G LFE+ G+ I LT G Sbjct: 51 RQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTE 110 Query: 64 LLNRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPKVTIE 123 LL+ +R I E + + G + + I + ++ P L E R VT+ Sbjct: 111 LLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFPRLLVEFARSHQGVTLN 169 Query: 124 LKVSMNDVLLAGLKTG--ELDIVLGPMIQEDEVFHTEEIMQDQMVVMASP-HHPIFERRI 180 L V + LL L +L I++ P D + E V++A+P HH + ++ I Sbjct: 170 LSVHNREGLLNQLANNLTDLAIMVRPPTDMDTI--NEPFAPHPYVIVAAPDHHLVSKKNI 227 Query: 181 KLRHLLEYQWVL 192 + L+ +V+ Sbjct: 228 PMSTLIHEPFVV 239 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 538,883 Number of extensions: 21007 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 18 Length of query: 295 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 214 Effective length of database: 733,452 Effective search space: 156958728 Effective search space used: 156958728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)