BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4389.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 144 6e-36 gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 139 2e-34 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 125 3e-30 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 120 1e-28 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 100 2e-22 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 144 bits (363), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 147/267 (55%), Gaps = 11/267 (4%) Query: 52 AIIVR-YGGVSARVMDASPALRVISKHGTGIDTIDSQAAQQRGIVVKAAAGANAPAVAEH 110 A+IVR V ++DA+P LRV+ + G G+D ID A + RGI V A GANA AVAE+ Sbjct: 53 ALIVRNRTKVDIALLDAAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATGANAGAVAEY 112 Query: 111 TWALIMACAKNVVGLDRRMRDGHWDKST-HKSLELKGRTLGLVGLGAIGRRVAAVAVALE 169 MA + G W ++ E+ G+TLGL+G G IG+ A +A AL Sbjct: 113 VIGTAMALLREAYTRSAETAAGTWPRTALSNGREIAGKTLGLIGFGGIGQLTARLAQALG 172 Query: 170 MPVLAYDPYAKEAPQ-------GVQLVDLDTLLAGSDVVSLHCPLTAENKHMINAQSLAR 222 + V+A+DP AP GV L +L +D+VSLH PLT +++I A +LAR Sbjct: 173 VTVIAHDPLL--APDAAIWQQAGVACKQLHEVLEQADIVSLHIPLTTNTRNLIGADALAR 230 Query: 223 MKDGAILVNTARGGLIDEQALIAALGSGKLLAAGLDSFEKEPFAAPHPLQQVGNAILSPH 282 MK A+L+NT+RG ++DE AL AL S L A +D F +EP A + L IL+PH Sbjct: 231 MKPDAVLINTSRGEIVDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVILTPH 290 Query: 283 IGGVTTDAYIAMGTGAASNVLAVLNTQ 309 I GVTT++ + A V A L + Sbjct: 291 IAGVTTESNTRVSALIAQRVAAYLQKK 317 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 16/289 (5%) Query: 38 EDDLVQLAQQHQPV-----AIIVRYGGVSARVMDASPALRVISKHGTGIDTIDSQAAQQR 92 ED + A+ H+ + II +S V+ A+P L+ I G + ID AA + Sbjct: 30 EDRIFSPAELHEKMQGKDGVIITSSEKLSGEVITANPQLKAICNVAVGYNNIDVAAATKA 89 Query: 93 GIVVKAAAGANAPAVAEHTWALIMACAKNVVGLDRRMRDGHWDKSTHKSL---ELKGRTL 149 GI+V A++ W L+MA A+ + +R G W ++ G TL Sbjct: 90 GIMVTNTPDVLNETTADYAWTLLMANARRTSESEHYLRAGKWKNWRFDQFLGADVHGATL 149 Query: 150 GLVGLGAIGRRVAAVAVALEMPVLAYD-----PYAKEAPQGVQLVDLDTLLAGSDVVSLH 204 G++G+G IG+ +A ++ +M V+ ++ P + + V + LL +D + L Sbjct: 150 GILGMGRIGQAIARRSMGFDMQVIYHNRSRLTPDQEAHANNARYVSKEELLRTADHLILV 209 Query: 205 CPLTAENKHMINAQSLARMKDGAILVNTARGGLIDEQALIAALGSGKLLAAGLDSFEKEP 264 P + + H+I A LA MK A LVN ARGG++D+ ALIAAL ++ +AGLD +E EP Sbjct: 210 LPYSEQTHHIIGAAELALMKPTATLVNIARGGIVDDVALIAALREHRIASAGLDVYENEP 269 Query: 265 FAAPHP-LQQVGNAILSPHIGGVTTDAYIAMGTGAASNVLAVLNTQAQP 312 A HP + N +L+PHIG + AM A+ N++A L+ Q P Sbjct: 270 --ALHPDFLTLSNVVLTPHIGSASEKTRRAMSDCASLNMVAALSGQRPP 316 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 119/244 (48%), Gaps = 11/244 (4%) Query: 74 ISKHGTGIDTIDSQAAQQRGIVVKAAAGANAPAVAEHTWALIMACAKNVVGLDRRMRDGH 133 IS+ G ID AA R I + G + A AE TWALIMA + + ++DG Sbjct: 73 ISQTGKVSGHIDLSAAAARNITIVEGVG-DPTAPAELTWALIMAAMRKLPQYVGNLKDGL 131 Query: 134 WD----KSTHKSLE--LKGRTLGLVGLGAIGRRVAAVAVALEMPVLAYDPYAKEAP---Q 184 W S H +L LKGRTLG+ G G IGR VA A M VL + A A Sbjct: 132 WQIASLSSAHNTLGAVLKGRTLGIWGYGRIGRMVAGYGQAFGMKVLVWGRDASRAAAVQD 191 Query: 185 GVQLVD-LDTLLAGSDVVSLHCPLTAENKHMINAQSLARMKDGAILVNTARGGLIDEQAL 243 G Q + + +DV+SLH L + ++ A LA MK A+ VNT+R L+ AL Sbjct: 192 GYQAASSREEFFSTADVLSLHLRLNDATRGIVTASDLAHMKSSALFVNTSRAELVASDAL 251 Query: 244 IAALGSGKLLAAGLDSFEKEPFAAPHPLQQVGNAILSPHIGGVTTDAYIAMGTGAASNVL 303 AL G+ A LD FE EP A L ++ N + SPH+G V D+Y A N++ Sbjct: 252 QTALEQGRPGYAALDVFESEPLAPTSSLLRMENVLASPHLGYVEKDSYELYFRSAFENIV 311 Query: 304 AVLN 307 A N Sbjct: 312 AFAN 315 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 71 LRVISKHGTGIDTIDSQAAQQRGIVVKAAAGANAPAVAEHTWALIMACAKNVVGLDRRMR 130 L++I G G D D +AA + I V N+ +VAEH +I++ +N + +++ Sbjct: 115 LKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVLMMILSQVRNYIPSYKQVI 174 Query: 131 DGHWD--KSTHKSLELKGRTLGLVGLGAIGRRVAAVAVALEMPVLAYD----PYAKEAPQ 184 DG W+ +S +L+ ++G V G IG RV + ++ + D P A E Sbjct: 175 DGGWNIADCVSRSYDLEAMSVGTVAAGRIGLRVLRLLHPFDVKLHYMDRHRLPTAVEKEL 234 Query: 185 GVQL-VDLDTLLAGSDVVSLHCPLTAENKHMINAQSLARMKDGAILVNTARGGLIDEQAL 243 + L++L DVV+L+CPL E +HMIN ++L K GA ++NTARG L D A+ Sbjct: 235 NLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGAYIINTARGKLCDRDAI 294 Query: 244 IAALGSGKLLAAGLDSFEKEPFAAPHPLQQVGNAILSPHIGGVTTDA 290 +AAL SG+L D + +P HP + + + ++PHI G + A Sbjct: 295 VAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHGMTPHISGTSLTA 341 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 16/258 (6%) Query: 67 ASPALRVISKHGTGIDTIDSQAAQQRGIVVKAAAGANAPAVAEHTWALIMACAKNVVGLD 126 A P L+++ G D D A +RG+ AE T L++ ++V+ D Sbjct: 64 ACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMAGD 123 Query: 127 RRMRDG--HWDKSTHKSLELKGRTLGLVGLGAIGRRVAAVAVALEMPVLAYD-----PYA 179 +R G H + L G T+G++G+G +G+ +A EM + D P Sbjct: 124 DHVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCDSVPLNPVD 183 Query: 180 KEAPQGVQLVDLDTLLAGSDVVSLHCPLTAENKHMINAQSLARMKDGAILVNTARGGLID 239 ++A Q V D LL SD V P+T++ H+I+A ++++M+ G+ L+NT+RG ++D Sbjct: 184 EQAWNARQ-VSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSRGSVVD 242 Query: 240 EQALIAALGSGKLLAAGLDSFEKEPFAAPHPLQQVGNAIL--------SPHIGGVTTDAY 291 E A++ AL G L D FE E +A P V A+L +PH+G Sbjct: 243 ENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSGVKKVR 302 Query: 292 IAMGTGAASNVLAVLNTQ 309 + + +A ++L L Q Sbjct: 303 LEIERYSAHSILQALAGQ 320 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.132 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 497,236 Number of extensions: 16780 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 5 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)