BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4383.p
         (432 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096226|ref|YP_001101301.1| UDP-N-acetylglucosamine 1-carbo...   184   7e-48

>gi|134096226|ref|YP_001101301.1| UDP-N-acetylglucosamine
           1-carboxyvinyltransferase [Herminiimonas arsenicoxydans]
          Length = 416

 Score =  184 bits (467), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 208/436 (47%), Gaps = 26/436 (5%)

Query: 1   MSNLIVHGGRPLRGDITPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60
           M  L++ GG  L G+I  S  KNA LPILCA LLT   L+L  +P + DV  +L++ R +
Sbjct: 1   MDKLLIQGGHRLSGEIAISGAKNAALPILCAGLLTADALQLSNVPHLQDVATMLKLLRQM 60

Query: 61  GSEVAVD------YASGILELHHRATRFDPKVHHLPEEMRSSIMLVPPLLARFGVARLEN 114
           G ++  D        SG+ +L           + + + MR+SI+++ PLL RFG AR+  
Sbjct: 61  GLQIEQDGDQVTLNGSGVDKLE--------APYEMVKTMRASILVLGPLLTRFGEARVSL 112

Query: 115 DVKGCTLGVREIDPHVEVFQRFGARVESSPDSLIIRSAAMQANHHWLDYASVTTTENFVL 174
              GC +G R +D H++  Q  GA +      +  ++  ++      D  +VT TEN ++
Sbjct: 113 P-GGCAIGTRPVDQHIKGLQAMGAEITIEAGYIHAKAKRLKGARIVTDMITVTGTENLLM 171

Query: 175 CAAAAAGESVLTNAASEPHVQEFCRFMAMMGVEIEGIGTSRVTVRGGGKLGGGEFRFDED 234
            A  A GE++L NAA EP V +    +  MG +I GIGT R+ ++G  +L G       D
Sbjct: 172 AAVLADGETILENAAREPEVTDLANLLVAMGAQIAGIGTDRLVIQGVERLHGASHAVIAD 231

Query: 235 FHEIATFLAMGAITGGQVRVRNSAPEQFPLIDRTFAKFGVEVVHENGWSHTRQNGPLKVV 294
             E ATFL   A  GG V +R +  +   +      + G  +   + W   + +   K V
Sbjct: 232 RIETATFLCAVAAVGGDVTLRKARTDTLDVAFDKLREAGAILTAGDDWIRVQMSSRPKAV 291

Query: 295 KPFTSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGA 354
              T+          +P  P D+   F+A+   AEG++     I++       E+++ GA
Sbjct: 292 SFRTTE---------YPGFPTDMQAQFMAMNCIAEGSSQVVETIFENRFMHVQEMNRLGA 342

Query: 355 HVFLGDPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPK 414
            + + + H  I  G   L  A V +   +R + +L + A + EG + I     + R + +
Sbjct: 343 AITI-EGHTAIVNGVDKLVGAPVMATD-LRASASLVIAALAAEGETLIDRIYHLDRGYDR 400

Query: 415 FVENLRSLGAVVDWVE 430
               L ++GA +  V+
Sbjct: 401 MEVKLSAVGAHIQRVK 416


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 823,645
Number of extensions: 33744
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 348
Effective length of database: 723,567
Effective search space: 251801316
Effective search space used: 251801316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)