BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4382.p
         (398 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidas...   201   7e-53
gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidas...   151   5e-38
gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypepti...    56   3e-09

>gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  201 bits (510), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 159/234 (67%), Gaps = 4/234 (1%)

Query: 161 VLDEQTNTPLFERDADTVAPIASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTLKFTHS 220
           V+D+ T+  LFE++A+   PIAS+TKLMT +V ++ +   +   LEV+ +D+D  K + S
Sbjct: 153 VIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQ-DMNEMLEVTAEDIDREKNSSS 211

Query: 221 RLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 280
           RL VG+ LSRA+MLHIALMSSENRAA+A+ R YPGG  AF+A MNA+A++LGM  TH+ +
Sbjct: 212 RLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNAKAKSLGMRGTHYVD 271

Query: 281 ATGLSPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 340
           +TGLS  NV++ R+LA++V  A  + ++R  S D + ++  G   LQY NSNRL+     
Sbjct: 272 STGLSSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVVEPGGRALQYANSNRLVTNPDW 331

Query: 341 NATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGSADGSRL-DGVRIAKWL 393
              +QKTG+I+E+G  +V++  + + RP+++  L S     SRL D  RI KWL
Sbjct: 332 EIGIQKTGYISEAGRCLVMQTNIKE-RPIVMIFLDS-KGKFSRLGDAARIRKWL 383


>gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 274

 Score =  151 bits (382), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 144/238 (60%), Gaps = 2/238 (0%)

Query: 156 SRGIYVLDEQTNTPLFERDADTVAPIASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTL 215
           S+   V+DE T   LFE+++  + PIAS+TKLMTAM+ LD + L +   + +++DD+DTL
Sbjct: 24  SKHAIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLVLDAR-LDMHEHIMITDDDVDTL 82

Query: 216 KFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSH 275
           KF+ SR+ VG+ L+R  +L +ALMSS+NRAA A++R YPGG   F  A   +A AL +  
Sbjct: 83  KFSSSRVPVGSMLTRNTLLELALMSSDNRAAHALARTYPGGIEHFRLAARNKAHALSLRR 142

Query: 276 THFENATGLSPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLI 335
           T+ E  TGLSP N ST  +LA +  AA RY  I   +     +I++G     Y N+N+L+
Sbjct: 143 TNIEEPTGLSPYNTSTASDLARLAMAAARYPEIERITTSAGDLIDLGSSARHYHNTNKLV 202

Query: 336 RYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGSADGSRLDGVRIAKWL 393
                  ++ KTG+  E+G  +++R+    R  ++V +    SA+ +  D V + ++L
Sbjct: 203 GDKNWTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTA-DAVSLHRFL 259


>gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine
           carboxypeptidase [Herminiimonas arsenicoxydans]
          Length = 382

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 30/254 (11%)

Query: 156 SRGIYVLDEQTNTPLFERDADTVAPIASVTKLMTAMVW---LDQKPLPLANRLEVSED-- 210
           ++   +LD  +N  L   +AD     AS+TKLMTA V    +  K + L   + VS +  
Sbjct: 30  AKSWLLLDATSNQILASNEADVRIEPASLTKLMTAYVAFSAIQDKRIALNQMITVSTNAW 89

Query: 211 --DLDTLK-FTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNAR 267
             D ++ K F   R+ V  +    D+L+  ++ S N AA A++    G   AF A MN  
Sbjct: 90  KVDPESSKMFIEPRVPVSVN----DLLYGLIVQSGNDAAVALAEAVAGTEDAFAALMNRE 145

Query: 268 AQALGMSHTHFENATGL-SPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMI---NIGR 323
           A+ +GM  T F N  GL SP N ST R+LA +         + +D  +  K+    +   
Sbjct: 146 AERMGMKSTRFANPHGLPSPNNYSTARDLAVLATH------LVSDHPEFYKIYSTKDFTY 199

Query: 324 GQLQYINSNRLIRYGQVNATVQ--KTGFINESGHNMV---LRLLVHDRRPVIVTMLGSGS 378
            +++  N NRL+    ++ TV   KTG+   +G+ ++    R    + R +I  ++G+ S
Sbjct: 200 NKIKQSNRNRLL---WLDPTVDGMKTGYTQNAGYCLISTAKRPNGANERRLISVVIGTAS 256

Query: 379 ADGSRLDGVRIAKW 392
                 +  ++  W
Sbjct: 257 DQARAQESQKLLNW 270


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 561,961
Number of extensions: 18799
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 314
Effective length of database: 723,567
Effective search space: 227200038
Effective search space used: 227200038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)