BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4381.p (501 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 183 2e-47 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 122 3e-29 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 122 5e-29 gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 113 3e-26 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 107 1e-24 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/389 (31%), Positives = 190/389 (48%), Gaps = 19/389 (4%) Query: 117 NFAGRDFFEQQRHELASGLYISSPLSVRMERRLHVLVLSKRLVNADGRFAGIAFMVLYLD 176 N A R++F R SG ++ P+ R ++ +S+RL +ADG FAG+ + + Sbjct: 135 NNADREYFIFHRTHTDSGPHLGPPIRSRSTGDW-IITVSRRLEHADGNFAGVVLATINMQ 193 Query: 177 YFRQLFEGLSLEKNAVMSLYTTSGVAYMRLPYDEAFIGSRLDNVPDLQRMTSPQAPQQGS 236 YF ++ + K + L T SG +R P+DEA IG + N P Q + G+ Sbjct: 194 YFSAYYKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFY--KRQGSSGT 251 Query: 237 YFARSRQDGVKRLYAYVRVPHTNWVVFIGRTKAELFRDWTRMFYAVLLLTAAFSTASIYL 296 + D +R+Y+Y + ++ + ++ E+ W +A L Sbjct: 252 AILTANIDRTERIYSYRHLDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSAMVLLLLWLL 311 Query: 297 ISRLREEF---------FRRGKLDLQLEQ-----QARTDKLTSLLNRRALDEALQEAWHK 342 +RL + R + DL+ A D LT L NRR D AL + + + Sbjct: 312 GARLVHQITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFAR 371 Query: 343 SQRNSTTRFAVLFADVDFFKLYNDTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEE 402 + RN T+ A++ DVD FK YND YGH GD L +++ ++ A AR D R+GGEE Sbjct: 372 AMRNQTS-LALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEE 430 Query: 403 FVALLDEADAQGALHVASNILTSLQALKIPHERSPFGRLSLSIGVACLDRDLHQ-SMEEV 461 FV LL D GA VA + ++QAL + H +P G ++ S+G+A L Q S +++ Sbjct: 431 FVILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQL 490 Query: 462 VKAADEALYQAKRAGRNRVQLYRPARAEQ 490 V AAD+ALY+AK GRN+ + A A+ Sbjct: 491 VHAADQALYKAKEDGRNQSCISTQASADN 519 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 103/173 (59%), Gaps = 9/173 (5%) Query: 309 KLDLQLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYNDTY 368 +L++ LEQ ARTD LT L NR +E L E + + +R S + +L DVDFFK ND Y Sbjct: 393 ELNITLEQLARTDALTGLANRMHTNERLAEEFARFKR-SKIPYCILMLDVDFFKRVNDIY 451 Query: 369 GHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTSLQA 428 GH GD L VA I A R+ D GR GGEEF+++L D+ A+ VA I ++++ Sbjct: 452 GHGVGDEVLKHVA-SILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIES 510 Query: 429 LKIPHERSPFGRLSLSIGVACLD-RDLHQSMEEVVKAADEALYQAKRAGRNRV 480 I P G L++SIGV + D+++ + V ADE +YQAK++GRN+V Sbjct: 511 TPI----GPVGNLTVSIGVQEVTVNDINEDV--AVTRADECMYQAKKSGRNKV 557 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 5/197 (2%) Query: 291 TASIYLISRLREE--FFRRGKLDLQLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNST 348 TA + L RLR+E R K +L EQ D LT + +R+ ++ L+ W + ++ Sbjct: 120 TARVVLEQRLRKERRLLERDKENL--EQLVVHDTLTGIYSRKYFEDQLRTRWDQLI-DTQ 176 Query: 349 TRFAVLFADVDFFKLYNDTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLD 408 ++F DVD+FK +NDTYGH AGD AL VA + ++ R + RFGGEEF+ L Sbjct: 177 ESLVMMFIDVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLAT 236 Query: 409 EADAQGALHVASNILTSLQALKIPHERSPFGRLSLSIGVACLDRDLHQSMEEVVKAADEA 468 E A+ A+ A N+ S++ L IPH SP L++S GV + E +++ AD A Sbjct: 237 EMTAEQAIMHAENLCRSVRDLDIPHAASPHQFLTISCGVVRMKPSSMAQPEVLLEQADSA 296 Query: 469 LYQAKRAGRNRVQLYRP 485 LYQAK GRN+V P Sbjct: 297 LYQAKARGRNQVASCEP 313 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 163/352 (46%), Gaps = 25/352 (7%) Query: 147 RRLHVLVLSKRLVNADGRFAGIAFMVLYLDYFRQLFEGLSLEKNAVMSLYTTSGVAYMRL 206 R + ++ R+++ DG F G + L LD + + S +K ++Y T +++ Sbjct: 158 RDAMTIFINHRVLDYDGNFIGATGVGLTLDTMTDILD--SYQKRFHRNIYFTDAKGEIKM 215 Query: 207 P----YDEAFIGSRLDNVPDLQR--MTSPQAPQQGSYFARSRQDGVKRLYAYVRVPHTNW 260 D ++L V + + + P Q Y + +G L + +P +W Sbjct: 216 TGKSMQDIHGPIAKLPGVSAIAKDILNRDVRPTQLEY----QHNGATILMSSRFIPELDW 271 Query: 261 VVFIGRTKAELFRDWTRMFYAVLLLTAAFSTASIYLISRLREEFFRRGKLDLQLEQQART 320 + + + + R R+F ++++A + + L + RR LEQ A T Sbjct: 272 YLLVEQDITDDVRPIERVFVINIIVSAVATLLILALTLFAVNRYQRR------LEQIAGT 325 Query: 321 DKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYNDTYGHKAGDYALVAV 380 D LT LLNR+A + Q+A S+R A+LF D+DFFK+ ND +GH AGD L ++ Sbjct: 326 DTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILF-DIDFFKMVNDNHGHLAGDRILQSI 384 Query: 381 ARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTSLQALKIPHE-RSPFG 439 A + AV R+ D R+GGEEF+ LL + + A +A I + + H+ P Sbjct: 385 AAITKNAV-RESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAG----HDFELPAS 439 Query: 440 RLSLSIGVACLDRDLHQSMEEVVKAADEALYQAKRAGRNRVQLYRPARAEQA 491 L L++ + + ++ AD ALYQAK GRNRV + RP A Sbjct: 440 ALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVIVSRPEATTDA 491 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 14/185 (7%) Query: 306 RRGKLDLQLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYN 365 +R +LQ+E QA D LT L NRR L L A S R + +LF D+DFFK N Sbjct: 389 KRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETS-RQQQSSLTMLFCDLDFFKSVN 447 Query: 366 DTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTS 425 DT+GH GD L+ +++ I AV + D RFGG EFV L + + A+ ++ A I + Sbjct: 448 DTHGHDFGDQCLLEISKRIV-AVLPESDFVARFGGNEFVILTNSSLAESSIK-AKAIARA 505 Query: 426 LQALKIPHERSPFG----RLSLSIGVACLDRDLHQSMEEVVKAADEALYQAKRAGRNRVQ 481 + ER F ++ +SIG+A L D HQ ++++ AD A+YQAK GRNR + Sbjct: 506 VS------ERLVFENVAVKIQVSIGIAQLSPD-HQVPADLIREADAAMYQAKERGRNRTE 558 Query: 482 LYRPA 486 +Y A Sbjct: 559 IYDAA 563 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 864,626 Number of extensions: 34826 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 30 Length of query: 501 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 415 Effective length of database: 716,977 Effective search space: 297545455 Effective search space used: 297545455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)